Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05858

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05856 and H281DRAFT_05857 are separated by 8 nucleotidesH281DRAFT_05857 and H281DRAFT_05858 are separated by 39 nucleotidesH281DRAFT_05858 and H281DRAFT_05859 are separated by 213 nucleotides H281DRAFT_05856: H281DRAFT_05856 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC, at 135,639 to 136,442 _05856 H281DRAFT_05857: H281DRAFT_05857 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB, at 136,451 to 136,735 _05857 H281DRAFT_05858: H281DRAFT_05858 - ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA, at 136,775 to 137,773 _05858 H281DRAFT_05859: H281DRAFT_05859 - hypothetical protein, at 137,987 to 139,612 _05859 Position (kb) 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 135.840 kb on + strand, within H281DRAFT_05856at 135.841 kb on - strand, within H281DRAFT_05856at 135.893 kb on - strand, within H281DRAFT_05856at 135.905 kb on - strand, within H281DRAFT_05856at 135.905 kb on - strand, within H281DRAFT_05856at 135.905 kb on - strand, within H281DRAFT_05856at 135.991 kb on + strand, within H281DRAFT_05856at 136.180 kb on + strand, within H281DRAFT_05856at 136.180 kb on + strand, within H281DRAFT_05856at 136.180 kb on + strandat 136.181 kb on - strand, within H281DRAFT_05856at 136.211 kb on - strand, within H281DRAFT_05856at 136.275 kb on - strand, within H281DRAFT_05856at 136.415 kb on - strandat 136.415 kb on - strandat 136.415 kb on - strandat 136.452 kb on + strandat 136.452 kb on + strandat 136.452 kb on + strandat 136.482 kb on + strand, within H281DRAFT_05857at 136.483 kb on - strand, within H281DRAFT_05857at 136.500 kb on + strand, within H281DRAFT_05857at 136.501 kb on - strand, within H281DRAFT_05857at 136.612 kb on - strand, within H281DRAFT_05857at 136.676 kb on - strand, within H281DRAFT_05857at 136.676 kb on - strand, within H281DRAFT_05857at 136.954 kb on - strand, within H281DRAFT_05858at 136.954 kb on - strand, within H281DRAFT_05858at 137.283 kb on + strand, within H281DRAFT_05858at 137.293 kb on - strand, within H281DRAFT_05858at 137.386 kb on - strand, within H281DRAFT_05858at 137.386 kb on - strand, within H281DRAFT_05858at 137.404 kb on - strand, within H281DRAFT_05858at 137.404 kb on - strand, within H281DRAFT_05858at 137.474 kb on - strand, within H281DRAFT_05858at 137.475 kb on + strand, within H281DRAFT_05858at 137.476 kb on - strand, within H281DRAFT_05858at 137.476 kb on - strand, within H281DRAFT_05858at 137.477 kb on + strand, within H281DRAFT_05858at 137.477 kb on + strand, within H281DRAFT_05858at 137.477 kb on + strand, within H281DRAFT_05858at 137.478 kb on - strand, within H281DRAFT_05858at 137.478 kb on - strand, within H281DRAFT_05858at 137.478 kb on - strand, within H281DRAFT_05858at 137.478 kb on - strand, within H281DRAFT_05858at 137.478 kb on - strand, within H281DRAFT_05858at 137.478 kb on - strand, within H281DRAFT_05858at 137.478 kb on - strand, within H281DRAFT_05858at 137.753 kb on - strandat 137.770 kb on - strandat 137.770 kb on - strandat 137.880 kb on + strandat 137.929 kb on + strandat 137.934 kb on + strandat 137.935 kb on - strandat 137.936 kb on + strandat 137.936 kb on + strandat 137.991 kb on + strandat 137.991 kb on + strandat 137.991 kb on + strandat 137.991 kb on + strandat 137.991 kb on + strandat 137.991 kb on + strandat 137.991 kb on + strandat 137.991 kb on + strandat 137.992 kb on - strandat 137.992 kb on - strandat 138.101 kb on + strandat 138.102 kb on - strandat 138.102 kb on - strandat 138.158 kb on + strand, within H281DRAFT_05859at 138.158 kb on + strand, within H281DRAFT_05859at 138.158 kb on + strand, within H281DRAFT_05859at 138.158 kb on + strand, within H281DRAFT_05859at 138.158 kb on + strand, within H281DRAFT_05859at 138.158 kb on + strand, within H281DRAFT_05859at 138.158 kb on + strand, within H281DRAFT_05859at 138.158 kb on + strand, within H281DRAFT_05859at 138.158 kb on + strand, within H281DRAFT_05859at 138.158 kb on + strand, within H281DRAFT_05859at 138.159 kb on - strand, within H281DRAFT_05859at 138.159 kb on - strand, within H281DRAFT_05859at 138.159 kb on - strand, within H281DRAFT_05859at 138.159 kb on - strand, within H281DRAFT_05859at 138.159 kb on - strand, within H281DRAFT_05859at 138.159 kb on - strand, within H281DRAFT_05859at 138.159 kb on - strand, within H281DRAFT_05859at 138.159 kb on - strand, within H281DRAFT_05859at 138.159 kb on - strand, within H281DRAFT_05859at 138.160 kb on + strand, within H281DRAFT_05859at 138.160 kb on + strand, within H281DRAFT_05859at 138.160 kb on + strand, within H281DRAFT_05859at 138.160 kb on + strand, within H281DRAFT_05859at 138.161 kb on - strand, within H281DRAFT_05859at 138.161 kb on - strand, within H281DRAFT_05859at 138.161 kb on - strand, within H281DRAFT_05859at 138.162 kb on + strand, within H281DRAFT_05859at 138.162 kb on + strand, within H281DRAFT_05859at 138.162 kb on + strand, within H281DRAFT_05859at 138.162 kb on + strand, within H281DRAFT_05859at 138.163 kb on - strand, within H281DRAFT_05859at 138.163 kb on - strand, within H281DRAFT_05859at 138.163 kb on - strand, within H281DRAFT_05859at 138.163 kb on - strand, within H281DRAFT_05859at 138.163 kb on - strand, within H281DRAFT_05859at 138.249 kb on - strand, within H281DRAFT_05859at 138.249 kb on - strand, within H281DRAFT_05859at 138.249 kb on - strand, within H281DRAFT_05859at 138.503 kb on + strand, within H281DRAFT_05859at 138.503 kb on + strand, within H281DRAFT_05859at 138.504 kb on - strand, within H281DRAFT_05859at 138.504 kb on - strand, within H281DRAFT_05859at 138.504 kb on - strand, within H281DRAFT_05859at 138.531 kb on - strand, within H281DRAFT_05859at 138.585 kb on + strand, within H281DRAFT_05859at 138.585 kb on + strand, within H281DRAFT_05859at 138.585 kb on + strand, within H281DRAFT_05859at 138.585 kb on + strand, within H281DRAFT_05859at 138.585 kb on + strand, within H281DRAFT_05859at 138.585 kb on + strand, within H281DRAFT_05859at 138.585 kb on + strand, within H281DRAFT_05859at 138.585 kb on + strand, within H281DRAFT_05859at 138.585 kb on + strand, within H281DRAFT_05859at 138.585 kb on + strand, within H281DRAFT_05859at 138.586 kb on - strand, within H281DRAFT_05859at 138.586 kb on - strand, within H281DRAFT_05859at 138.586 kb on - strand, within H281DRAFT_05859at 138.586 kb on - strand, within H281DRAFT_05859at 138.586 kb on - strand, within H281DRAFT_05859at 138.587 kb on + strand, within H281DRAFT_05859at 138.587 kb on + strand, within H281DRAFT_05859at 138.587 kb on + strand, within H281DRAFT_05859at 138.587 kb on + strand, within H281DRAFT_05859at 138.588 kb on - strand, within H281DRAFT_05859at 138.588 kb on - strand, within H281DRAFT_05859

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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135,840 + H281DRAFT_05856 0.25 +0.5
135,841 - H281DRAFT_05856 0.25 +1.4
135,893 - H281DRAFT_05856 0.32 +1.9
135,905 - H281DRAFT_05856 0.33 +1.2
135,905 - H281DRAFT_05856 0.33 +0.3
135,905 - H281DRAFT_05856 0.33 -0.1
135,991 + H281DRAFT_05856 0.44 -0.5
136,180 + H281DRAFT_05856 0.67 +0.7
136,180 + H281DRAFT_05856 0.67 +0.7
136,180 + +1.2
136,181 - H281DRAFT_05856 0.67 +0.4
136,211 - H281DRAFT_05856 0.71 +1.2
136,275 - H281DRAFT_05856 0.79 +0.0
136,415 - +1.1
136,415 - +1.8
136,415 - +0.7
136,452 + -1.4
136,452 + +0.8
136,452 + +2.4
136,482 + H281DRAFT_05857 0.11 +0.2
136,483 - H281DRAFT_05857 0.11 +0.3
136,500 + H281DRAFT_05857 0.17 +1.3
136,501 - H281DRAFT_05857 0.18 +1.2
136,612 - H281DRAFT_05857 0.56 +0.8
136,676 - H281DRAFT_05857 0.79 +0.3
136,676 - H281DRAFT_05857 0.79 +2.0
136,954 - H281DRAFT_05858 0.18 -0.5
136,954 - H281DRAFT_05858 0.18 -1.2
137,283 + H281DRAFT_05858 0.51 -0.3
137,293 - H281DRAFT_05858 0.52 -0.9
137,386 - H281DRAFT_05858 0.61 +1.4
137,386 - H281DRAFT_05858 0.61 +1.3
137,404 - H281DRAFT_05858 0.63 +0.1
137,404 - H281DRAFT_05858 0.63 -0.0
137,474 - H281DRAFT_05858 0.70 +0.1
137,475 + H281DRAFT_05858 0.70 +0.4
137,476 - H281DRAFT_05858 0.70 +1.3
137,476 - H281DRAFT_05858 0.70 -0.6
137,477 + H281DRAFT_05858 0.70 +0.5
137,477 + H281DRAFT_05858 0.70 -0.3
137,477 + H281DRAFT_05858 0.70 +1.6
137,478 - H281DRAFT_05858 0.70 +0.0
137,478 - H281DRAFT_05858 0.70 +0.7
137,478 - H281DRAFT_05858 0.70 +1.0
137,478 - H281DRAFT_05858 0.70 +1.3
137,478 - H281DRAFT_05858 0.70 +0.4
137,478 - H281DRAFT_05858 0.70 -0.6
137,478 - H281DRAFT_05858 0.70 -0.1
137,753 - +0.0
137,770 - +1.0
137,770 - +1.5
137,880 + -1.0
137,929 + -0.5
137,934 + -0.8
137,935 - -0.2
137,936 + +0.2
137,936 + -0.3
137,991 + +0.7
137,991 + -0.4
137,991 + -0.1
137,991 + +0.6
137,991 + +0.8
137,991 + +1.4
137,991 + -0.5
137,991 + -0.2
137,992 - +1.1
137,992 - +0.5
138,101 + -2.2
138,102 - -1.3
138,102 - +1.0
138,158 + H281DRAFT_05859 0.11 +0.6
138,158 + H281DRAFT_05859 0.11 +0.2
138,158 + H281DRAFT_05859 0.11 -0.4
138,158 + H281DRAFT_05859 0.11 -0.8
138,158 + H281DRAFT_05859 0.11 -0.5
138,158 + H281DRAFT_05859 0.11 +0.2
138,158 + H281DRAFT_05859 0.11 +0.1
138,158 + H281DRAFT_05859 0.11 +0.6
138,158 + H281DRAFT_05859 0.11 -0.1
138,158 + H281DRAFT_05859 0.11 -0.8
138,159 - H281DRAFT_05859 0.11 +0.1
138,159 - H281DRAFT_05859 0.11 -0.5
138,159 - H281DRAFT_05859 0.11 +0.8
138,159 - H281DRAFT_05859 0.11 -2.8
138,159 - H281DRAFT_05859 0.11 +0.1
138,159 - H281DRAFT_05859 0.11 +0.1
138,159 - H281DRAFT_05859 0.11 +0.3
138,159 - H281DRAFT_05859 0.11 -1.0
138,159 - H281DRAFT_05859 0.11 +0.1
138,160 + H281DRAFT_05859 0.11 +0.2
138,160 + H281DRAFT_05859 0.11 -0.2
138,160 + H281DRAFT_05859 0.11 +0.4
138,160 + H281DRAFT_05859 0.11 -0.2
138,161 - H281DRAFT_05859 0.11 +0.3
138,161 - H281DRAFT_05859 0.11 +0.4
138,161 - H281DRAFT_05859 0.11 +1.3
138,162 + H281DRAFT_05859 0.11 +1.5
138,162 + H281DRAFT_05859 0.11 +0.5
138,162 + H281DRAFT_05859 0.11 -0.3
138,162 + H281DRAFT_05859 0.11 +0.2
138,163 - H281DRAFT_05859 0.11 +0.4
138,163 - H281DRAFT_05859 0.11 +0.4
138,163 - H281DRAFT_05859 0.11 +0.0
138,163 - H281DRAFT_05859 0.11 +0.8
138,163 - H281DRAFT_05859 0.11 -0.1
138,249 - H281DRAFT_05859 0.16 -0.6
138,249 - H281DRAFT_05859 0.16 +0.3
138,249 - H281DRAFT_05859 0.16 -0.1
138,503 + H281DRAFT_05859 0.32 +1.4
138,503 + H281DRAFT_05859 0.32 +0.4
138,504 - H281DRAFT_05859 0.32 +0.0
138,504 - H281DRAFT_05859 0.32 +0.6
138,504 - H281DRAFT_05859 0.32 +0.5
138,531 - H281DRAFT_05859 0.33 +0.8
138,585 + H281DRAFT_05859 0.37 -0.0
138,585 + H281DRAFT_05859 0.37 +0.3
138,585 + H281DRAFT_05859 0.37 -0.6
138,585 + H281DRAFT_05859 0.37 +0.6
138,585 + H281DRAFT_05859 0.37 +0.7
138,585 + H281DRAFT_05859 0.37 +1.7
138,585 + H281DRAFT_05859 0.37 +0.8
138,585 + H281DRAFT_05859 0.37 +0.4
138,585 + H281DRAFT_05859 0.37 +0.5
138,585 + H281DRAFT_05859 0.37 +0.3
138,586 - H281DRAFT_05859 0.37 +0.1
138,586 - H281DRAFT_05859 0.37 -0.0
138,586 - H281DRAFT_05859 0.37 -1.9
138,586 - H281DRAFT_05859 0.37 +0.5
138,586 - H281DRAFT_05859 0.37 -2.1
138,587 + H281DRAFT_05859 0.37 +0.1
138,587 + H281DRAFT_05859 0.37 +0.0
138,587 + H281DRAFT_05859 0.37 -0.0
138,587 + H281DRAFT_05859 0.37 +0.5
138,588 - H281DRAFT_05859 0.37 -0.0
138,588 - H281DRAFT_05859 0.37 +0.2

Or see this region's nucleotide sequence