Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05664 and H281DRAFT_05665 are separated by 39 nucleotides H281DRAFT_05665 and H281DRAFT_05666 are separated by 34 nucleotides H281DRAFT_05666 and H281DRAFT_05667 are separated by 194 nucleotides
H281DRAFT_05664: H281DRAFT_05664 - sec-independent protein translocase protein TatA, at 82,551 to 82,787
_05664
H281DRAFT_05665: H281DRAFT_05665 - sec-independent protein translocase protein TatB, at 82,827 to 83,345
_05665
H281DRAFT_05666: H281DRAFT_05666 - Sec-independent protein translocase TatC, at 83,380 to 84,159
_05666
H281DRAFT_05667: H281DRAFT_05667 - serine protease DegQ, at 84,354 to 85,568
_05667
Position (kb) 83
84
85 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 82.410 kb on + strand at 82.458 kb on + strand at 82.463 kb on + strand at 82.463 kb on + strand at 83.365 kb on + strand at 84.236 kb on + strand at 84.254 kb on + strand at 84.332 kb on + strand at 84.607 kb on - strand, within H281DRAFT_05667 at 84.800 kb on - strand, within H281DRAFT_05667 at 84.905 kb on + strand, within H281DRAFT_05667 at 84.905 kb on + strand, within H281DRAFT_05667 at 84.905 kb on + strand, within H281DRAFT_05667 at 84.906 kb on - strand, within H281DRAFT_05667 at 84.906 kb on - strand, within H281DRAFT_05667 at 84.906 kb on - strand, within H281DRAFT_05667 at 84.906 kb on - strand, within H281DRAFT_05667 at 84.906 kb on - strand, within H281DRAFT_05667 at 84.981 kb on - strand, within H281DRAFT_05667
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 82,410 + +0.4 82,458 + -0.4 82,463 + -1.4 82,463 + +0.4 83,365 + +1.2 84,236 + -0.0 84,254 + -1.2 84,332 + -1.4 84,607 - H281DRAFT_05667 0.21 -2.0 84,800 - H281DRAFT_05667 0.37 -1.1 84,905 + H281DRAFT_05667 0.45 -1.0 84,905 + H281DRAFT_05667 0.45 -0.5 84,905 + H281DRAFT_05667 0.45 -2.3 84,906 - H281DRAFT_05667 0.45 -3.6 84,906 - H281DRAFT_05667 0.45 -0.7 84,906 - H281DRAFT_05667 0.45 -0.3 84,906 - H281DRAFT_05667 0.45 -1.2 84,906 - H281DRAFT_05667 0.45 +0.2 84,981 - H281DRAFT_05667 0.52 -0.5
Or see this region's nucleotide sequence