Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04930 and H281DRAFT_04931 are separated by 100 nucleotides H281DRAFT_04931 and H281DRAFT_04932 are separated by 18 nucleotides H281DRAFT_04932 and H281DRAFT_04933 are separated by 302 nucleotides
H281DRAFT_04930: H281DRAFT_04930 - Cupin domain, at 112,380 to 113,816
_04930
H281DRAFT_04931: H281DRAFT_04931 - Surfactin synthase thioesterase subunit, at 113,917 to 114,735
_04931
H281DRAFT_04932: H281DRAFT_04932 - MbtH protein, at 114,754 to 114,987
_04932
H281DRAFT_04933: H281DRAFT_04933 - Nitroreductase, at 115,290 to 115,913
_04933
Position (kb) 114
115 Strain fitness (log2 ratio) -1
0
1 at 113.756 kb on - strand at 114.089 kb on - strand, within H281DRAFT_04931 at 114.201 kb on + strand, within H281DRAFT_04931 at 114.201 kb on + strand, within H281DRAFT_04931 at 114.822 kb on + strand, within H281DRAFT_04932 at 114.911 kb on + strand, within H281DRAFT_04932 at 114.930 kb on - strand, within H281DRAFT_04932 at 114.946 kb on + strand, within H281DRAFT_04932 at 115.009 kb on + strand at 115.009 kb on + strand at 115.010 kb on - strand at 115.191 kb on + strand at 115.192 kb on - strand at 115.281 kb on + strand at 115.295 kb on + strand at 115.295 kb on + strand at 115.295 kb on + strand at 115.295 kb on + strand at 115.296 kb on - strand at 115.296 kb on - strand at 115.296 kb on - strand at 115.417 kb on + strand, within H281DRAFT_04933 at 115.882 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 113,756 - -0.6 114,089 - H281DRAFT_04931 0.21 -0.1 114,201 + H281DRAFT_04931 0.35 +1.0 114,201 + H281DRAFT_04931 0.35 +0.5 114,822 + H281DRAFT_04932 0.29 +1.0 114,911 + H281DRAFT_04932 0.67 +1.2 114,930 - H281DRAFT_04932 0.75 +0.3 114,946 + H281DRAFT_04932 0.82 +1.6 115,009 + +0.2 115,009 + +0.4 115,010 - -0.3 115,191 + -0.7 115,192 - +1.4 115,281 + +0.4 115,295 + -0.0 115,295 + -0.4 115,295 + +0.5 115,295 + -0.6 115,296 - +0.5 115,296 - +0.8 115,296 - +0.7 115,417 + H281DRAFT_04933 0.20 +0.5 115,882 + -0.8
Or see this region's nucleotide sequence