Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04886

Experiment: Protocatechuic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04885 and H281DRAFT_04886 overlap by 1 nucleotidesH281DRAFT_04886 and H281DRAFT_04887 overlap by 4 nucleotides H281DRAFT_04885: H281DRAFT_04885 - Uncharacterized membrane protein, at 28,963 to 30,336 _04885 H281DRAFT_04886: H281DRAFT_04886 - Glycosyltransferase involved in cell wall bisynthesis, at 30,336 to 31,973 _04886 H281DRAFT_04887: H281DRAFT_04887 - hypothetical protein, at 31,970 to 33,019 _04887 Position (kb) 30 31 32Strain fitness (log2 ratio) -1 0 1 2at 29.424 kb on - strand, within H281DRAFT_04885at 29.438 kb on + strand, within H281DRAFT_04885at 29.501 kb on + strand, within H281DRAFT_04885at 29.526 kb on - strand, within H281DRAFT_04885at 30.025 kb on - strand, within H281DRAFT_04885at 30.027 kb on - strand, within H281DRAFT_04885at 30.135 kb on - strand, within H281DRAFT_04885at 30.204 kb on + strandat 30.205 kb on - strandat 30.458 kb on - strandat 31.129 kb on + strand, within H281DRAFT_04886at 31.298 kb on + strand, within H281DRAFT_04886at 31.300 kb on + strand, within H281DRAFT_04886at 31.301 kb on - strand, within H281DRAFT_04886at 31.301 kb on - strand, within H281DRAFT_04886at 31.373 kb on - strand, within H281DRAFT_04886at 31.393 kb on + strand, within H281DRAFT_04886at 31.746 kb on + strand, within H281DRAFT_04886at 31.751 kb on - strand, within H281DRAFT_04886at 32.317 kb on - strand, within H281DRAFT_04887at 32.686 kb on - strand, within H281DRAFT_04887

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
remove
29,424 - H281DRAFT_04885 0.34 -1.6
29,438 + H281DRAFT_04885 0.35 -0.1
29,501 + H281DRAFT_04885 0.39 -0.5
29,526 - H281DRAFT_04885 0.41 -0.8
30,025 - H281DRAFT_04885 0.77 +1.6
30,027 - H281DRAFT_04885 0.77 +0.0
30,135 - H281DRAFT_04885 0.85 +1.1
30,204 + +0.6
30,205 - +0.1
30,458 - +0.5
31,129 + H281DRAFT_04886 0.48 +0.9
31,298 + H281DRAFT_04886 0.59 -1.0
31,300 + H281DRAFT_04886 0.59 +2.1
31,301 - H281DRAFT_04886 0.59 -0.9
31,301 - H281DRAFT_04886 0.59 -0.2
31,373 - H281DRAFT_04886 0.63 +0.4
31,393 + H281DRAFT_04886 0.65 +0.1
31,746 + H281DRAFT_04886 0.86 +0.2
31,751 - H281DRAFT_04886 0.86 +0.4
32,317 - H281DRAFT_04887 0.33 -0.5
32,686 - H281DRAFT_04887 0.68 -1.0

Or see this region's nucleotide sequence