Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04743 and H281DRAFT_04744 are separated by 239 nucleotides H281DRAFT_04744 and H281DRAFT_04745 are separated by 237 nucleotides H281DRAFT_04745 and H281DRAFT_04746 overlap by 4 nucleotides
H281DRAFT_04743: H281DRAFT_04743 - MFS transporter, DHA1 family, arabinose polymer transporter, at 152,144 to 153,310
_04743
H281DRAFT_04744: H281DRAFT_04744 - enoyl-CoA hydratase, at 153,550 to 154,374
_04744
H281DRAFT_04745: H281DRAFT_04745 - hypothetical protein, at 154,612 to 155,085
_04745
H281DRAFT_04746: H281DRAFT_04746 - D-lactate dehydrogenase, at 155,082 to 156,107
_04746
Position (kb) 153
154
155 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 152.727 kb on - strand, within H281DRAFT_04743 at 152.727 kb on - strand, within H281DRAFT_04743 at 153.416 kb on + strand at 153.416 kb on + strand at 153.417 kb on - strand at 153.503 kb on - strand at 153.520 kb on + strand at 153.551 kb on + strand at 153.552 kb on - strand at 153.641 kb on - strand, within H281DRAFT_04744 at 153.697 kb on + strand, within H281DRAFT_04744 at 153.698 kb on - strand, within H281DRAFT_04744 at 154.337 kb on - strand at 154.346 kb on + strand at 154.347 kb on - strand at 154.347 kb on - strand at 154.347 kb on - strand at 154.454 kb on + strand at 154.458 kb on - strand at 154.495 kb on - strand at 154.636 kb on + strand at 154.637 kb on - strand at 154.637 kb on - strand at 154.637 kb on - strand at 154.748 kb on - strand, within H281DRAFT_04745 at 154.748 kb on - strand, within H281DRAFT_04745 at 154.748 kb on - strand, within H281DRAFT_04745 at 154.761 kb on + strand, within H281DRAFT_04745 at 154.828 kb on - strand, within H281DRAFT_04745 at 154.844 kb on - strand, within H281DRAFT_04745 at 154.877 kb on + strand, within H281DRAFT_04745 at 154.945 kb on + strand at 155.084 kb on - strand at 155.327 kb on - strand, within H281DRAFT_04746
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 152,727 - H281DRAFT_04743 0.50 +0.2 152,727 - H281DRAFT_04743 0.50 +0.2 153,416 + -0.9 153,416 + +1.1 153,417 - +1.0 153,503 - +0.4 153,520 + +1.3 153,551 + -0.7 153,552 - +0.2 153,641 - H281DRAFT_04744 0.11 +0.7 153,697 + H281DRAFT_04744 0.18 -1.1 153,698 - H281DRAFT_04744 0.18 +1.0 154,337 - +0.5 154,346 + +0.4 154,347 - +0.2 154,347 - -0.3 154,347 - -0.1 154,454 + +0.4 154,458 - +3.1 154,495 - -0.1 154,636 + +0.9 154,637 - +0.6 154,637 - -0.3 154,637 - +0.4 154,748 - H281DRAFT_04745 0.29 +0.9 154,748 - H281DRAFT_04745 0.29 +0.2 154,748 - H281DRAFT_04745 0.29 -0.2 154,761 + H281DRAFT_04745 0.31 -0.0 154,828 - H281DRAFT_04745 0.46 +0.1 154,844 - H281DRAFT_04745 0.49 +2.3 154,877 + H281DRAFT_04745 0.56 -2.2 154,945 + +0.3 155,084 - +0.4 155,327 - H281DRAFT_04746 0.24 +0.2
Or see this region's nucleotide sequence