Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04731 and H281DRAFT_04732 are separated by 10 nucleotides H281DRAFT_04732 and H281DRAFT_04733 are separated by 101 nucleotides H281DRAFT_04733 and H281DRAFT_04734 are separated by 173 nucleotides H281DRAFT_04734 and H281DRAFT_04735 are separated by 139 nucleotides
H281DRAFT_04731: H281DRAFT_04731 - hypothetical protein, at 140,897 to 141,529
_04731
H281DRAFT_04732: H281DRAFT_04732 - type IV pilus assembly protein PilE, at 141,540 to 141,971
_04732
H281DRAFT_04733: H281DRAFT_04733 - Protein of unknown function (DUF3318), at 142,073 to 142,546
_04733
H281DRAFT_04734: H281DRAFT_04734 - Uncharacterized membrane protein YqjE, at 142,720 to 143,106
_04734
H281DRAFT_04735: H281DRAFT_04735 - Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family, at 143,246 to 143,548
_04735
Position (kb) 142
143 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 141.292 kb on + strand, within H281DRAFT_04731 at 141.293 kb on - strand, within H281DRAFT_04731 at 141.293 kb on - strand, within H281DRAFT_04731 at 141.404 kb on + strand, within H281DRAFT_04731 at 141.405 kb on - strand, within H281DRAFT_04731 at 141.450 kb on + strand, within H281DRAFT_04731 at 141.451 kb on - strand, within H281DRAFT_04731 at 141.537 kb on + strand at 141.537 kb on + strand at 141.537 kb on + strand at 141.537 kb on + strand at 141.537 kb on + strand at 141.538 kb on - strand at 141.538 kb on - strand at 141.538 kb on - strand at 141.538 kb on - strand at 141.538 kb on - strand at 141.538 kb on - strand at 141.538 kb on - strand at 141.538 kb on - strand at 141.557 kb on - strand at 141.557 kb on - strand at 141.634 kb on - strand, within H281DRAFT_04732 at 141.794 kb on - strand, within H281DRAFT_04732 at 141.794 kb on - strand, within H281DRAFT_04732 at 141.794 kb on - strand, within H281DRAFT_04732 at 141.794 kb on - strand, within H281DRAFT_04732 at 141.794 kb on - strand, within H281DRAFT_04732 at 141.794 kb on - strand, within H281DRAFT_04732 at 141.794 kb on - strand, within H281DRAFT_04732 at 141.794 kb on - strand, within H281DRAFT_04732 at 141.912 kb on - strand, within H281DRAFT_04732 at 141.979 kb on + strand at 141.980 kb on - strand at 142.104 kb on + strand at 142.104 kb on + strand at 142.105 kb on - strand at 142.315 kb on + strand, within H281DRAFT_04733 at 142.464 kb on - strand, within H281DRAFT_04733 at 142.561 kb on - strand at 142.561 kb on - strand at 142.650 kb on + strand at 142.650 kb on + strand at 142.651 kb on - strand at 142.651 kb on - strand at 142.651 kb on - strand at 142.722 kb on - strand at 142.728 kb on + strand at 142.728 kb on + strand at 142.729 kb on - strand at 142.735 kb on + strand at 142.735 kb on + strand at 142.735 kb on + strand at 142.735 kb on + strand at 142.735 kb on + strand at 142.877 kb on + strand, within H281DRAFT_04734 at 142.877 kb on + strand, within H281DRAFT_04734 at 142.878 kb on - strand, within H281DRAFT_04734 at 143.070 kb on + strand at 143.070 kb on + strand at 143.074 kb on + strand at 143.074 kb on + strand at 143.075 kb on - strand at 143.165 kb on - strand at 143.219 kb on + strand at 143.219 kb on + strand at 143.248 kb on - strand at 143.248 kb on - strand at 143.248 kb on - strand at 143.248 kb on - strand at 143.328 kb on + strand, within H281DRAFT_04735 at 143.329 kb on - strand, within H281DRAFT_04735
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 141,292 + H281DRAFT_04731 0.62 -0.7 141,293 - H281DRAFT_04731 0.63 +0.3 141,293 - H281DRAFT_04731 0.63 -0.5 141,404 + H281DRAFT_04731 0.80 +0.5 141,405 - H281DRAFT_04731 0.80 +1.1 141,450 + H281DRAFT_04731 0.87 -0.4 141,451 - H281DRAFT_04731 0.88 -0.6 141,537 + +0.2 141,537 + -0.4 141,537 + -0.9 141,537 + -0.0 141,537 + -0.4 141,538 - +1.4 141,538 - +0.0 141,538 - -0.6 141,538 - +3.5 141,538 - +0.3 141,538 - +0.6 141,538 - -0.6 141,538 - +0.6 141,557 - +0.1 141,557 - +0.9 141,634 - H281DRAFT_04732 0.22 +0.6 141,794 - H281DRAFT_04732 0.59 -0.4 141,794 - H281DRAFT_04732 0.59 +0.4 141,794 - H281DRAFT_04732 0.59 +0.1 141,794 - H281DRAFT_04732 0.59 +0.0 141,794 - H281DRAFT_04732 0.59 +0.6 141,794 - H281DRAFT_04732 0.59 +0.4 141,794 - H281DRAFT_04732 0.59 +1.2 141,794 - H281DRAFT_04732 0.59 -0.1 141,912 - H281DRAFT_04732 0.86 -0.5 141,979 + +0.6 141,980 - -0.1 142,104 + -1.5 142,104 + +0.1 142,105 - -0.2 142,315 + H281DRAFT_04733 0.51 -0.0 142,464 - H281DRAFT_04733 0.82 -1.8 142,561 - -0.1 142,561 - -0.1 142,650 + -0.5 142,650 + +0.3 142,651 - -0.1 142,651 - +0.7 142,651 - +0.6 142,722 - -0.2 142,728 + -1.6 142,728 + -1.1 142,729 - +0.9 142,735 + -1.7 142,735 + -0.1 142,735 + -1.7 142,735 + -0.7 142,735 + -0.8 142,877 + H281DRAFT_04734 0.41 -0.4 142,877 + H281DRAFT_04734 0.41 -1.2 142,878 - H281DRAFT_04734 0.41 -0.7 143,070 + +1.1 143,070 + +0.3 143,074 + -0.7 143,074 + -2.7 143,075 - -0.1 143,165 - +0.1 143,219 + +1.7 143,219 + -1.1 143,248 - +0.2 143,248 - -0.4 143,248 - +1.8 143,248 - -1.6 143,328 + H281DRAFT_04735 0.27 -0.4 143,329 - H281DRAFT_04735 0.27 -0.4
Or see this region's nucleotide sequence