Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04624 and H281DRAFT_04625 are separated by 115 nucleotides H281DRAFT_04625 and H281DRAFT_04626 are separated by 76 nucleotides
H281DRAFT_04624: H281DRAFT_04624 - hypothetical protein, at 18,403 to 20,190
_04624
H281DRAFT_04625: H281DRAFT_04625 - 3-hydroxyacyl-CoA dehydrogenase, at 20,306 to 22,741
_04625
H281DRAFT_04626: H281DRAFT_04626 - acetyl-CoA acyltransferase, at 22,818 to 24,017
_04626
Position (kb) 20
21
22
23 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 19.337 kb on - strand, within H281DRAFT_04624 at 19.472 kb on - strand, within H281DRAFT_04624 at 19.472 kb on - strand, within H281DRAFT_04624 at 19.498 kb on + strand, within H281DRAFT_04624 at 19.499 kb on - strand, within H281DRAFT_04624 at 19.651 kb on + strand, within H281DRAFT_04624 at 19.651 kb on + strand, within H281DRAFT_04624 at 19.652 kb on - strand, within H281DRAFT_04624 at 19.693 kb on + strand, within H281DRAFT_04624 at 19.694 kb on - strand, within H281DRAFT_04624 at 19.723 kb on + strand, within H281DRAFT_04624 at 19.724 kb on - strand, within H281DRAFT_04624 at 19.724 kb on - strand, within H281DRAFT_04624 at 19.724 kb on - strand, within H281DRAFT_04624 at 19.724 kb on - strand, within H281DRAFT_04624 at 19.972 kb on + strand, within H281DRAFT_04624 at 19.973 kb on - strand, within H281DRAFT_04624 at 20.005 kb on + strand, within H281DRAFT_04624 at 20.005 kb on + strand, within H281DRAFT_04624 at 20.006 kb on - strand at 20.095 kb on + strand at 20.096 kb on - strand at 20.096 kb on - strand at 20.189 kb on + strand at 20.286 kb on + strand at 20.516 kb on + strand at 20.517 kb on - strand at 20.517 kb on - strand at 20.517 kb on - strand at 20.534 kb on + strand at 20.618 kb on + strand, within H281DRAFT_04625 at 20.618 kb on + strand, within H281DRAFT_04625 at 20.619 kb on - strand, within H281DRAFT_04625 at 20.762 kb on + strand, within H281DRAFT_04625 at 20.763 kb on - strand, within H281DRAFT_04625 at 20.763 kb on - strand, within H281DRAFT_04625 at 21.179 kb on + strand, within H281DRAFT_04625 at 21.371 kb on + strand, within H281DRAFT_04625 at 21.371 kb on + strand, within H281DRAFT_04625 at 21.372 kb on - strand, within H281DRAFT_04625 at 21.601 kb on + strand, within H281DRAFT_04625 at 21.665 kb on + strand, within H281DRAFT_04625 at 21.846 kb on + strand, within H281DRAFT_04625 at 21.847 kb on - strand, within H281DRAFT_04625 at 21.847 kb on - strand, within H281DRAFT_04625 at 21.888 kb on - strand, within H281DRAFT_04625 at 22.125 kb on + strand, within H281DRAFT_04625 at 22.125 kb on + strand, within H281DRAFT_04625 at 22.126 kb on - strand, within H281DRAFT_04625 at 22.126 kb on - strand, within H281DRAFT_04625 at 22.129 kb on + strand, within H281DRAFT_04625 at 22.129 kb on + strand, within H281DRAFT_04625 at 22.160 kb on + strand, within H281DRAFT_04625 at 22.160 kb on + strand, within H281DRAFT_04625 at 22.160 kb on + strand, within H281DRAFT_04625 at 22.161 kb on - strand, within H281DRAFT_04625 at 22.161 kb on - strand, within H281DRAFT_04625 at 22.756 kb on + strand at 22.756 kb on + strand at 22.757 kb on - strand at 22.778 kb on - strand at 22.778 kb on - strand at 22.842 kb on + strand at 22.842 kb on + strand at 22.842 kb on + strand at 22.842 kb on + strand at 22.901 kb on + strand at 22.902 kb on - strand at 22.902 kb on - strand at 23.237 kb on + strand, within H281DRAFT_04626 at 23.238 kb on - strand, within H281DRAFT_04626 at 23.238 kb on - strand, within H281DRAFT_04626 at 23.413 kb on - strand, within H281DRAFT_04626 at 23.505 kb on - strand, within H281DRAFT_04626
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 19,337 - H281DRAFT_04624 0.52 -2.4 19,472 - H281DRAFT_04624 0.60 -2.3 19,472 - H281DRAFT_04624 0.60 -2.9 19,498 + H281DRAFT_04624 0.61 -3.1 19,499 - H281DRAFT_04624 0.61 -1.7 19,651 + H281DRAFT_04624 0.70 -1.0 19,651 + H281DRAFT_04624 0.70 -2.7 19,652 - H281DRAFT_04624 0.70 -0.8 19,693 + H281DRAFT_04624 0.72 -1.5 19,694 - H281DRAFT_04624 0.72 -4.4 19,723 + H281DRAFT_04624 0.74 -2.3 19,724 - H281DRAFT_04624 0.74 -3.7 19,724 - H281DRAFT_04624 0.74 -3.7 19,724 - H281DRAFT_04624 0.74 -3.2 19,724 - H281DRAFT_04624 0.74 -2.3 19,972 + H281DRAFT_04624 0.88 -1.3 19,973 - H281DRAFT_04624 0.88 -2.1 20,005 + H281DRAFT_04624 0.90 -2.6 20,005 + H281DRAFT_04624 0.90 -4.1 20,006 - +0.7 20,095 + -3.1 20,096 - +0.1 20,096 - -1.9 20,189 + -0.8 20,286 + -0.3 20,516 + -0.6 20,517 - -1.6 20,517 - +0.6 20,517 - -0.6 20,534 + +0.6 20,618 + H281DRAFT_04625 0.13 -0.1 20,618 + H281DRAFT_04625 0.13 +0.3 20,619 - H281DRAFT_04625 0.13 -0.3 20,762 + H281DRAFT_04625 0.19 -0.8 20,763 - H281DRAFT_04625 0.19 -0.3 20,763 - H281DRAFT_04625 0.19 -0.5 21,179 + H281DRAFT_04625 0.36 +0.9 21,371 + H281DRAFT_04625 0.44 +0.6 21,371 + H281DRAFT_04625 0.44 +0.1 21,372 - H281DRAFT_04625 0.44 +0.7 21,601 + H281DRAFT_04625 0.53 -1.5 21,665 + H281DRAFT_04625 0.56 -0.7 21,846 + H281DRAFT_04625 0.63 -0.1 21,847 - H281DRAFT_04625 0.63 -0.5 21,847 - H281DRAFT_04625 0.63 -0.2 21,888 - H281DRAFT_04625 0.65 -0.3 22,125 + H281DRAFT_04625 0.75 +0.6 22,125 + H281DRAFT_04625 0.75 +0.1 22,126 - H281DRAFT_04625 0.75 -0.8 22,126 - H281DRAFT_04625 0.75 +0.3 22,129 + H281DRAFT_04625 0.75 -0.4 22,129 + H281DRAFT_04625 0.75 -0.3 22,160 + H281DRAFT_04625 0.76 -1.2 22,160 + H281DRAFT_04625 0.76 -0.4 22,160 + H281DRAFT_04625 0.76 -0.9 22,161 - H281DRAFT_04625 0.76 +0.3 22,161 - H281DRAFT_04625 0.76 +2.9 22,756 + -0.6 22,756 + -0.4 22,757 - -0.4 22,778 - +0.3 22,778 - -0.7 22,842 + -0.1 22,842 + -0.8 22,842 + -0.0 22,842 + +0.9 22,901 + -0.2 22,902 - +0.6 22,902 - -1.1 23,237 + H281DRAFT_04626 0.35 +0.4 23,238 - H281DRAFT_04626 0.35 +0.9 23,238 - H281DRAFT_04626 0.35 +0.5 23,413 - H281DRAFT_04626 0.50 +0.5 23,505 - H281DRAFT_04626 0.57 -0.2
Or see this region's nucleotide sequence