Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04524 and H281DRAFT_04525 are separated by 98 nucleotides H281DRAFT_04525 and H281DRAFT_04526 are separated by 63 nucleotides H281DRAFT_04526 and H281DRAFT_04527 are separated by 213 nucleotides H281DRAFT_04527 and H281DRAFT_04528 overlap by 4 nucleotides H281DRAFT_04528 and H281DRAFT_04529 overlap by 4 nucleotides
H281DRAFT_04524: H281DRAFT_04524 - 3-oxoacyl-[acyl-carrier protein] reductase, at 256,161 to 256,940
_04524
H281DRAFT_04525: H281DRAFT_04525 - methylglyoxal synthase, at 257,039 to 257,428
_04525
H281DRAFT_04526: H281DRAFT_04526 - NADPH2:quinone reductase, at 257,492 to 258,466
_04526
H281DRAFT_04527: H281DRAFT_04527 - hypothetical protein, at 258,680 to 258,793
_04527
H281DRAFT_04528: H281DRAFT_04528 - K+-transporting ATPase, KdpF subunit, at 258,790 to 258,882
_04528
H281DRAFT_04529: H281DRAFT_04529 - K+-transporting ATPase ATPase A chain, at 258,879 to 260,684
_04529
Position (kb) 257
258
259 Strain fitness (log2 ratio) -1
0
1 at 256.884 kb on + strand at 256.885 kb on - strand at 256.885 kb on - strand at 256.939 kb on - strand at 256.947 kb on - strand at 256.956 kb on + strand at 257.033 kb on + strand at 257.033 kb on + strand at 257.033 kb on + strand at 257.033 kb on + strand at 257.033 kb on + strand at 257.034 kb on - strand at 257.344 kb on - strand, within H281DRAFT_04525 at 257.615 kb on + strand, within H281DRAFT_04526 at 257.615 kb on + strand, within H281DRAFT_04526 at 257.615 kb on + strand, within H281DRAFT_04526 at 257.615 kb on + strand, within H281DRAFT_04526 at 257.616 kb on - strand, within H281DRAFT_04526 at 257.617 kb on + strand, within H281DRAFT_04526 at 257.628 kb on - strand, within H281DRAFT_04526 at 257.644 kb on - strand, within H281DRAFT_04526 at 257.747 kb on + strand, within H281DRAFT_04526 at 257.748 kb on - strand, within H281DRAFT_04526 at 257.771 kb on + strand, within H281DRAFT_04526 at 257.876 kb on + strand, within H281DRAFT_04526 at 257.895 kb on - strand, within H281DRAFT_04526 at 258.062 kb on + strand, within H281DRAFT_04526 at 258.062 kb on + strand, within H281DRAFT_04526 at 258.063 kb on - strand, within H281DRAFT_04526 at 258.065 kb on - strand, within H281DRAFT_04526 at 258.065 kb on - strand, within H281DRAFT_04526 at 258.148 kb on + strand, within H281DRAFT_04526 at 258.148 kb on + strand, within H281DRAFT_04526 at 258.294 kb on - strand, within H281DRAFT_04526 at 258.294 kb on - strand, within H281DRAFT_04526 at 258.294 kb on - strand, within H281DRAFT_04526 at 258.402 kb on + strand at 258.516 kb on - strand at 258.639 kb on + strand at 258.890 kb on + strand at 259.072 kb on - strand, within H281DRAFT_04529 at 259.240 kb on - strand, within H281DRAFT_04529 at 259.413 kb on + strand, within H281DRAFT_04529
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 256,884 + -0.1 256,885 - -0.4 256,885 - +0.7 256,939 - +0.1 256,947 - +0.6 256,956 + +0.3 257,033 + -0.4 257,033 + +0.5 257,033 + +0.8 257,033 + -0.1 257,033 + +0.4 257,034 - +0.3 257,344 - H281DRAFT_04525 0.78 -0.4 257,615 + H281DRAFT_04526 0.13 +0.2 257,615 + H281DRAFT_04526 0.13 +0.3 257,615 + H281DRAFT_04526 0.13 +0.7 257,615 + H281DRAFT_04526 0.13 -0.5 257,616 - H281DRAFT_04526 0.13 -0.5 257,617 + H281DRAFT_04526 0.13 +1.2 257,628 - H281DRAFT_04526 0.14 -0.5 257,644 - H281DRAFT_04526 0.16 +0.5 257,747 + H281DRAFT_04526 0.26 +1.1 257,748 - H281DRAFT_04526 0.26 +0.3 257,771 + H281DRAFT_04526 0.29 +1.7 257,876 + H281DRAFT_04526 0.39 -0.6 257,895 - H281DRAFT_04526 0.41 -0.3 258,062 + H281DRAFT_04526 0.58 -1.1 258,062 + H281DRAFT_04526 0.58 -0.9 258,063 - H281DRAFT_04526 0.59 -0.3 258,065 - H281DRAFT_04526 0.59 -0.1 258,065 - H281DRAFT_04526 0.59 +0.5 258,148 + H281DRAFT_04526 0.67 -0.9 258,148 + H281DRAFT_04526 0.67 +1.4 258,294 - H281DRAFT_04526 0.82 -0.9 258,294 - H281DRAFT_04526 0.82 +0.1 258,294 - H281DRAFT_04526 0.82 +0.4 258,402 + +0.3 258,516 - -0.2 258,639 + +0.3 258,890 + -0.0 259,072 - H281DRAFT_04529 0.11 +0.7 259,240 - H281DRAFT_04529 0.20 +0.4 259,413 + H281DRAFT_04529 0.30 +0.3
Or see this region's nucleotide sequence