Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04340 and H281DRAFT_04341 overlap by 8 nucleotides H281DRAFT_04341 and H281DRAFT_04342 overlap by 4 nucleotides H281DRAFT_04342 and H281DRAFT_04343 are separated by 42 nucleotides
H281DRAFT_04340: H281DRAFT_04340 - 23S rRNA pseudouridine955/2504/2580 synthase, at 59,558 to 60,595
_04340
H281DRAFT_04341: H281DRAFT_04341 - phosphoglycolate phosphatase, at 60,588 to 61,247
_04341
H281DRAFT_04342: H281DRAFT_04342 - Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase, at 61,244 to 61,660
_04342
H281DRAFT_04343: H281DRAFT_04343 - protease-4, at 61,703 to 62,707
_04343
Position (kb) 61
62 Strain fitness (log2 ratio) -2
-1
0
1 at 60.281 kb on + strand, within H281DRAFT_04340 at 60.555 kb on + strand at 60.593 kb on + strand at 60.593 kb on + strand at 60.726 kb on + strand, within H281DRAFT_04341 at 60.726 kb on + strand, within H281DRAFT_04341 at 60.726 kb on + strand, within H281DRAFT_04341 at 60.726 kb on + strand, within H281DRAFT_04341 at 60.726 kb on + strand, within H281DRAFT_04341 at 60.726 kb on + strand, within H281DRAFT_04341 at 60.726 kb on + strand, within H281DRAFT_04341 at 60.726 kb on + strand, within H281DRAFT_04341 at 60.727 kb on - strand, within H281DRAFT_04341 at 60.727 kb on - strand, within H281DRAFT_04341 at 60.825 kb on + strand, within H281DRAFT_04341 at 60.825 kb on + strand, within H281DRAFT_04341 at 60.826 kb on - strand, within H281DRAFT_04341 at 60.901 kb on - strand, within H281DRAFT_04341 at 61.149 kb on + strand, within H281DRAFT_04341 at 61.150 kb on - strand, within H281DRAFT_04341 at 61.150 kb on - strand, within H281DRAFT_04341 at 61.194 kb on + strand at 61.194 kb on + strand at 61.194 kb on + strand at 61.194 kb on + strand at 61.194 kb on + strand at 61.195 kb on - strand at 61.195 kb on - strand at 61.195 kb on - strand at 61.279 kb on + strand at 61.280 kb on - strand at 61.413 kb on - strand, within H281DRAFT_04342 at 61.413 kb on - strand at 61.486 kb on - strand, within H281DRAFT_04342 at 61.488 kb on - strand, within H281DRAFT_04342 at 61.585 kb on - strand, within H281DRAFT_04342 at 61.677 kb on + strand at 61.678 kb on - strand at 61.678 kb on - strand at 61.678 kb on - strand at 61.712 kb on - strand at 61.911 kb on + strand, within H281DRAFT_04343 at 61.912 kb on - strand, within H281DRAFT_04343 at 61.912 kb on - strand, within H281DRAFT_04343 at 61.912 kb on - strand, within H281DRAFT_04343 at 62.225 kb on + strand, within H281DRAFT_04343 at 62.226 kb on - strand, within H281DRAFT_04343 at 62.226 kb on - strand, within H281DRAFT_04343 at 62.226 kb on - strand, within H281DRAFT_04343 at 62.226 kb on - strand, within H281DRAFT_04343 at 62.327 kb on - strand, within H281DRAFT_04343 at 62.327 kb on - strand, within H281DRAFT_04343 at 62.342 kb on - strand, within H281DRAFT_04343 at 62.480 kb on - strand, within H281DRAFT_04343 at 62.523 kb on + strand, within H281DRAFT_04343 at 62.524 kb on - strand, within H281DRAFT_04343 at 62.524 kb on - strand, within H281DRAFT_04343 at 62.524 kb on - strand, within H281DRAFT_04343
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 60,281 + H281DRAFT_04340 0.70 -1.6 60,555 + -0.5 60,593 + +0.7 60,593 + +0.2 60,726 + H281DRAFT_04341 0.21 +0.5 60,726 + H281DRAFT_04341 0.21 -0.3 60,726 + H281DRAFT_04341 0.21 -0.9 60,726 + H281DRAFT_04341 0.21 +0.4 60,726 + H281DRAFT_04341 0.21 -1.0 60,726 + H281DRAFT_04341 0.21 +0.4 60,726 + H281DRAFT_04341 0.21 +0.2 60,726 + H281DRAFT_04341 0.21 -0.1 60,727 - H281DRAFT_04341 0.21 +0.5 60,727 - H281DRAFT_04341 0.21 -0.1 60,825 + H281DRAFT_04341 0.36 +1.3 60,825 + H281DRAFT_04341 0.36 -0.6 60,826 - H281DRAFT_04341 0.36 -0.7 60,901 - H281DRAFT_04341 0.47 +0.5 61,149 + H281DRAFT_04341 0.85 -0.7 61,150 - H281DRAFT_04341 0.85 +0.3 61,150 - H281DRAFT_04341 0.85 -0.3 61,194 + +0.7 61,194 + -0.6 61,194 + +0.2 61,194 + +0.8 61,194 + +0.7 61,195 - +0.2 61,195 - -0.7 61,195 - -0.4 61,279 + +0.2 61,280 - +0.3 61,413 - H281DRAFT_04342 0.41 -0.1 61,413 - -2.0 61,486 - H281DRAFT_04342 0.58 +0.4 61,488 - H281DRAFT_04342 0.59 -0.6 61,585 - H281DRAFT_04342 0.82 -0.7 61,677 + -0.2 61,678 - +0.2 61,678 - +1.0 61,678 - +1.5 61,712 - +0.5 61,911 + H281DRAFT_04343 0.21 +0.3 61,912 - H281DRAFT_04343 0.21 -0.1 61,912 - H281DRAFT_04343 0.21 +0.1 61,912 - H281DRAFT_04343 0.21 +0.4 62,225 + H281DRAFT_04343 0.52 +0.6 62,226 - H281DRAFT_04343 0.52 +0.3 62,226 - H281DRAFT_04343 0.52 -0.1 62,226 - H281DRAFT_04343 0.52 -0.0 62,226 - H281DRAFT_04343 0.52 +0.1 62,327 - H281DRAFT_04343 0.62 -0.9 62,327 - H281DRAFT_04343 0.62 -0.5 62,342 - H281DRAFT_04343 0.64 -0.1 62,480 - H281DRAFT_04343 0.77 -0.7 62,523 + H281DRAFT_04343 0.82 -0.8 62,524 - H281DRAFT_04343 0.82 +0.2 62,524 - H281DRAFT_04343 0.82 -0.3 62,524 - H281DRAFT_04343 0.82 -0.5
Or see this region's nucleotide sequence