Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04243

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04241 and H281DRAFT_04242 are separated by 19 nucleotidesH281DRAFT_04242 and H281DRAFT_04243 are separated by 92 nucleotidesH281DRAFT_04243 and H281DRAFT_04244 are separated by 110 nucleotides H281DRAFT_04241: H281DRAFT_04241 - probable rRNA maturation factor, at 359,940 to 360,401 _04241 H281DRAFT_04242: H281DRAFT_04242 - cation transport protein ChaC, at 360,421 to 361,134 _04242 H281DRAFT_04243: H281DRAFT_04243 - magnesium and cobalt transporter, at 361,227 to 362,258 _04243 H281DRAFT_04244: H281DRAFT_04244 - apolipoprotein N-acyltransferase, at 362,369 to 364,087 _04244 Position (kb) 361 362 363Strain fitness (log2 ratio) -2 -1 0 1at 360.399 kb on + strandat 360.399 kb on + strandat 360.399 kb on + strandat 360.399 kb on + strandat 360.469 kb on + strandat 360.566 kb on + strand, within H281DRAFT_04242at 360.566 kb on + strand, within H281DRAFT_04242at 360.567 kb on - strand, within H281DRAFT_04242at 360.567 kb on - strand, within H281DRAFT_04242at 360.567 kb on - strand, within H281DRAFT_04242at 360.662 kb on - strand, within H281DRAFT_04242at 360.662 kb on - strand, within H281DRAFT_04242at 360.662 kb on - strand, within H281DRAFT_04242at 360.910 kb on + strand, within H281DRAFT_04242at 360.911 kb on - strand, within H281DRAFT_04242at 360.988 kb on + strand, within H281DRAFT_04242at 360.988 kb on + strand, within H281DRAFT_04242at 360.989 kb on - strand, within H281DRAFT_04242at 360.989 kb on - strand, within H281DRAFT_04242at 360.989 kb on - strand, within H281DRAFT_04242at 361.052 kb on + strand, within H281DRAFT_04242at 361.129 kb on - strandat 361.153 kb on + strandat 361.215 kb on + strandat 361.315 kb on + strandat 361.315 kb on + strandat 361.321 kb on + strandat 361.321 kb on + strandat 361.361 kb on + strand, within H281DRAFT_04243at 361.361 kb on + strand, within H281DRAFT_04243at 361.377 kb on + strand, within H281DRAFT_04243at 361.377 kb on + strand, within H281DRAFT_04243at 361.377 kb on + strand, within H281DRAFT_04243at 361.549 kb on + strand, within H281DRAFT_04243at 361.647 kb on + strand, within H281DRAFT_04243at 361.683 kb on + strand, within H281DRAFT_04243at 361.683 kb on + strand, within H281DRAFT_04243at 361.683 kb on + strand, within H281DRAFT_04243at 361.683 kb on + strandat 361.740 kb on + strand, within H281DRAFT_04243at 361.901 kb on + strand, within H281DRAFT_04243at 362.459 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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360,399 + -0.2
360,399 + +0.4
360,399 + +0.9
360,399 + -1.3
360,469 + +0.6
360,566 + H281DRAFT_04242 0.20 -1.3
360,566 + H281DRAFT_04242 0.20 +0.3
360,567 - H281DRAFT_04242 0.20 +0.2
360,567 - H281DRAFT_04242 0.20 +0.2
360,567 - H281DRAFT_04242 0.20 -0.0
360,662 - H281DRAFT_04242 0.34 +0.2
360,662 - H281DRAFT_04242 0.34 +0.1
360,662 - H281DRAFT_04242 0.34 -0.1
360,910 + H281DRAFT_04242 0.68 -1.1
360,911 - H281DRAFT_04242 0.69 -0.4
360,988 + H281DRAFT_04242 0.79 +0.2
360,988 + H281DRAFT_04242 0.79 -0.1
360,989 - H281DRAFT_04242 0.80 +0.8
360,989 - H281DRAFT_04242 0.80 +0.3
360,989 - H281DRAFT_04242 0.80 +1.4
361,052 + H281DRAFT_04242 0.88 +0.2
361,129 - +0.7
361,153 + -1.8
361,215 + -0.5
361,315 + -1.2
361,315 + +0.6
361,321 + -0.1
361,321 + -0.6
361,361 + H281DRAFT_04243 0.13 +0.0
361,361 + H281DRAFT_04243 0.13 -0.5
361,377 + H281DRAFT_04243 0.15 -1.5
361,377 + H281DRAFT_04243 0.15 -2.1
361,377 + H281DRAFT_04243 0.15 -2.1
361,549 + H281DRAFT_04243 0.31 -1.2
361,647 + H281DRAFT_04243 0.41 -1.0
361,683 + H281DRAFT_04243 0.44 -1.1
361,683 + H281DRAFT_04243 0.44 -0.8
361,683 + H281DRAFT_04243 0.44 -2.3
361,683 + -1.5
361,740 + H281DRAFT_04243 0.50 -1.9
361,901 + H281DRAFT_04243 0.65 -1.1
362,459 + -0.8

Or see this region's nucleotide sequence