Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04231 and H281DRAFT_04232 are separated by 164 nucleotides H281DRAFT_04232 and H281DRAFT_04234 are separated by 493 nucleotides
H281DRAFT_04231: H281DRAFT_04231 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 351,424 to 352,110
_04231
H281DRAFT_04232: H281DRAFT_04232 - 3,4-dihydroxy 2-butanone 4-phosphate synthase, at 352,275 to 352,994
_04232
H281DRAFT_04234: H281DRAFT_04234 - transcriptional regulator, XRE family with cupin sensor, at 353,488 to 354,177
_04234
Position (kb) 352
353 Strain fitness (log2 ratio) -1
0
1 at 351.346 kb on + strand at 351.347 kb on - strand at 351.347 kb on - strand at 351.458 kb on + strand at 351.459 kb on - strand at 351.459 kb on - strand at 351.856 kb on + strand, within H281DRAFT_04231 at 351.984 kb on + strand, within H281DRAFT_04231 at 352.108 kb on + strand at 352.131 kb on - strand at 352.262 kb on + strand at 352.263 kb on - strand at 352.487 kb on + strand, within H281DRAFT_04232 at 352.487 kb on + strand, within H281DRAFT_04232 at 352.487 kb on + strand, within H281DRAFT_04232 at 352.487 kb on + strand, within H281DRAFT_04232 at 352.982 kb on + strand at 353.140 kb on + strand at 353.141 kb on - strand at 353.241 kb on - strand at 353.359 kb on + strand at 353.360 kb on - strand at 353.360 kb on - strand at 353.360 kb on - strand at 353.360 kb on - strand at 353.360 kb on - strand at 353.392 kb on + strand at 353.434 kb on - strand at 353.610 kb on + strand, within H281DRAFT_04234 at 353.610 kb on + strand, within H281DRAFT_04234 at 353.611 kb on - strand, within H281DRAFT_04234
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 351,346 + -1.3 351,347 - -1.0 351,347 - -0.7 351,458 + -1.2 351,459 - -0.5 351,459 - +0.3 351,856 + H281DRAFT_04231 0.63 -0.1 351,984 + H281DRAFT_04231 0.82 -0.6 352,108 + +0.4 352,131 - -0.0 352,262 + -0.4 352,263 - -1.2 352,487 + H281DRAFT_04232 0.29 +0.8 352,487 + H281DRAFT_04232 0.29 -0.2 352,487 + H281DRAFT_04232 0.29 +0.2 352,487 + H281DRAFT_04232 0.29 -0.1 352,982 + +0.2 353,140 + +0.4 353,141 - +0.1 353,241 - -1.2 353,359 + +0.2 353,360 - -1.0 353,360 - -0.0 353,360 - +0.4 353,360 - -1.1 353,360 - -0.8 353,392 + +0.2 353,434 - +0.3 353,610 + H281DRAFT_04234 0.18 +0.6 353,610 + H281DRAFT_04234 0.18 +1.5 353,611 - H281DRAFT_04234 0.18 -0.9
Or see this region's nucleotide sequence