Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04066 and H281DRAFT_04067 are separated by 278 nucleotides H281DRAFT_04067 and H281DRAFT_04068 are separated by 10 nucleotides H281DRAFT_04068 and H281DRAFT_04069 are separated by 241 nucleotides
H281DRAFT_04066: H281DRAFT_04066 - DNA replication and repair protein RadC, at 167,694 to 168,458
_04066
H281DRAFT_04067: H281DRAFT_04067 - LSU ribosomal protein L28P, at 168,737 to 168,970
_04067
H281DRAFT_04068: H281DRAFT_04068 - LSU ribosomal protein L33P, at 168,981 to 169,148
_04068
H281DRAFT_04069: H281DRAFT_04069 - L-aspartate oxidase, at 169,390 to 170,988
_04069
Position (kb) 168
169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 168.230 kb on + strand, within H281DRAFT_04066 at 168.241 kb on - strand, within H281DRAFT_04066 at 168.302 kb on + strand, within H281DRAFT_04066 at 168.302 kb on + strand, within H281DRAFT_04066 at 168.303 kb on - strand, within H281DRAFT_04066 at 168.410 kb on - strand at 168.428 kb on - strand at 168.428 kb on - strand at 168.428 kb on - strand at 168.429 kb on + strand at 168.429 kb on + strand at 168.429 kb on + strand at 168.483 kb on + strand at 168.483 kb on + strand at 168.483 kb on + strand at 169.142 kb on + strand at 169.269 kb on + strand at 169.269 kb on + strand at 169.269 kb on + strand at 169.270 kb on - strand at 169.273 kb on + strand at 169.273 kb on + strand at 169.273 kb on + strand at 169.273 kb on + strand at 169.274 kb on - strand at 169.274 kb on - strand at 169.279 kb on + strand at 169.279 kb on + strand at 169.279 kb on + strand at 169.279 kb on + strand at 169.279 kb on + strand at 169.279 kb on + strand at 169.279 kb on + strand at 169.279 kb on + strand at 169.279 kb on + strand at 169.279 kb on + strand at 169.280 kb on - strand at 169.280 kb on - strand at 169.280 kb on - strand at 169.280 kb on - strand at 169.280 kb on - strand at 169.280 kb on - strand at 169.282 kb on - strand at 169.282 kb on - strand at 169.282 kb on - strand at 169.334 kb on + strand at 169.335 kb on - strand at 169.359 kb on + strand at 169.359 kb on + strand at 169.359 kb on + strand at 169.737 kb on + strand, within H281DRAFT_04069 at 169.785 kb on - strand, within H281DRAFT_04069 at 169.847 kb on - strand, within H281DRAFT_04069 at 169.910 kb on - strand, within H281DRAFT_04069 at 169.959 kb on + strand, within H281DRAFT_04069 at 169.993 kb on + strand, within H281DRAFT_04069 at 169.993 kb on + strand, within H281DRAFT_04069 at 169.993 kb on + strand, within H281DRAFT_04069 at 169.994 kb on - strand, within H281DRAFT_04069 at 169.994 kb on - strand, within H281DRAFT_04069 at 169.999 kb on + strand, within H281DRAFT_04069 at 170.000 kb on - strand, within H281DRAFT_04069 at 170.073 kb on + strand, within H281DRAFT_04069 at 170.074 kb on - strand, within H281DRAFT_04069
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 168,230 + H281DRAFT_04066 0.70 -0.2 168,241 - H281DRAFT_04066 0.72 +0.1 168,302 + H281DRAFT_04066 0.79 +0.5 168,302 + H281DRAFT_04066 0.79 +0.4 168,303 - H281DRAFT_04066 0.80 -0.7 168,410 - +0.8 168,428 - +0.5 168,428 - -0.2 168,428 - -0.2 168,429 + +0.4 168,429 + -0.0 168,429 + +1.1 168,483 + -0.9 168,483 + -0.1 168,483 + -0.0 169,142 + -1.1 169,269 + -0.4 169,269 + -0.4 169,269 + -0.3 169,270 - -0.2 169,273 + +0.0 169,273 + +0.5 169,273 + +0.4 169,273 + +0.6 169,274 - +0.6 169,274 - -0.2 169,279 + -0.5 169,279 + -0.1 169,279 + +1.2 169,279 + +0.2 169,279 + -0.2 169,279 + +0.1 169,279 + +1.6 169,279 + -0.1 169,279 + +0.3 169,279 + -0.4 169,280 - +0.2 169,280 - +0.8 169,280 - -0.8 169,280 - +1.3 169,280 - +0.4 169,280 - +1.4 169,282 - +0.1 169,282 - -0.4 169,282 - +0.5 169,334 + -0.5 169,335 - -0.6 169,359 + +0.1 169,359 + -0.4 169,359 + -2.9 169,737 + H281DRAFT_04069 0.22 -1.9 169,785 - H281DRAFT_04069 0.25 -2.7 169,847 - H281DRAFT_04069 0.29 +0.7 169,910 - H281DRAFT_04069 0.33 -2.0 169,959 + H281DRAFT_04069 0.36 -1.3 169,993 + H281DRAFT_04069 0.38 -1.6 169,993 + H281DRAFT_04069 0.38 -1.5 169,993 + H281DRAFT_04069 0.38 -1.0 169,994 - H281DRAFT_04069 0.38 -1.4 169,994 - H281DRAFT_04069 0.38 -1.7 169,999 + H281DRAFT_04069 0.38 -1.3 170,000 - H281DRAFT_04069 0.38 -1.1 170,073 + H281DRAFT_04069 0.43 -0.8 170,074 - H281DRAFT_04069 0.43 -3.0
Or see this region's nucleotide sequence