Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03890 and H281DRAFT_03891 are separated by 216 nucleotides H281DRAFT_03891 and H281DRAFT_03892 are separated by 11 nucleotides H281DRAFT_03892 and H281DRAFT_03893 are separated by 152 nucleotides
H281DRAFT_03890: H281DRAFT_03890 - Broad specificity phosphatase PhoE, at 422,091 to 422,681
_03890
H281DRAFT_03891: H281DRAFT_03891 - Probable cobalt transporter subunit (CbtB), at 422,898 to 423,119
_03891
H281DRAFT_03892: H281DRAFT_03892 - Uncharacterized membrane protein, predicted cobalt tansporter CbtA, at 423,131 to 423,925
_03892
H281DRAFT_03893: H281DRAFT_03893 - hypothetical protein, at 424,078 to 424,905
_03893
Position (kb) 423
424 Strain fitness (log2 ratio) -2
-1
0
1
2 at 422.292 kb on + strand, within H281DRAFT_03890 at 422.293 kb on - strand, within H281DRAFT_03890 at 422.723 kb on - strand at 422.740 kb on - strand at 422.747 kb on - strand at 422.747 kb on - strand at 422.806 kb on + strand at 422.806 kb on + strand at 422.806 kb on + strand at 422.806 kb on + strand at 423.015 kb on + strand, within H281DRAFT_03891 at 423.015 kb on + strand, within H281DRAFT_03891 at 423.050 kb on - strand, within H281DRAFT_03891 at 423.063 kb on + strand, within H281DRAFT_03891 at 423.063 kb on + strand, within H281DRAFT_03891 at 423.063 kb on + strand, within H281DRAFT_03891 at 423.063 kb on + strand, within H281DRAFT_03891 at 423.063 kb on + strand, within H281DRAFT_03891 at 423.063 kb on + strand, within H281DRAFT_03891 at 423.064 kb on - strand, within H281DRAFT_03891 at 423.064 kb on - strand, within H281DRAFT_03891 at 423.064 kb on - strand, within H281DRAFT_03891 at 423.064 kb on - strand, within H281DRAFT_03891 at 423.398 kb on + strand, within H281DRAFT_03892 at 423.398 kb on + strand, within H281DRAFT_03892 at 423.399 kb on - strand, within H281DRAFT_03892 at 423.399 kb on - strand, within H281DRAFT_03892 at 423.440 kb on + strand, within H281DRAFT_03892 at 423.447 kb on - strand, within H281DRAFT_03892 at 423.539 kb on + strand, within H281DRAFT_03892 at 423.853 kb on - strand at 424.003 kb on - strand at 424.079 kb on + strand at 424.079 kb on + strand at 424.079 kb on + strand at 424.079 kb on + strand at 424.079 kb on + strand at 424.079 kb on + strand at 424.080 kb on - strand at 424.080 kb on - strand at 424.080 kb on - strand at 424.083 kb on + strand at 424.140 kb on + strand at 424.140 kb on + strand at 424.141 kb on - strand at 424.194 kb on - strand, within H281DRAFT_03893 at 424.194 kb on - strand, within H281DRAFT_03893 at 424.195 kb on + strand, within H281DRAFT_03893 at 424.195 kb on + strand, within H281DRAFT_03893 at 424.196 kb on - strand, within H281DRAFT_03893 at 424.196 kb on - strand, within H281DRAFT_03893 at 424.196 kb on - strand, within H281DRAFT_03893 at 424.196 kb on - strand, within H281DRAFT_03893 at 424.389 kb on - strand, within H281DRAFT_03893 at 424.410 kb on + strand, within H281DRAFT_03893 at 424.410 kb on + strand, within H281DRAFT_03893 at 424.411 kb on - strand, within H281DRAFT_03893 at 424.411 kb on - strand, within H281DRAFT_03893 at 424.411 kb on - strand, within H281DRAFT_03893 at 424.411 kb on - strand, within H281DRAFT_03893 at 424.411 kb on - strand, within H281DRAFT_03893 at 424.413 kb on - strand, within H281DRAFT_03893 at 424.413 kb on - strand, within H281DRAFT_03893 at 424.413 kb on - strand at 424.413 kb on - strand, within H281DRAFT_03893 at 424.427 kb on + strand, within H281DRAFT_03893 at 424.427 kb on + strand, within H281DRAFT_03893 at 424.427 kb on + strand, within H281DRAFT_03893 at 424.428 kb on - strand, within H281DRAFT_03893 at 424.428 kb on - strand, within H281DRAFT_03893 at 424.438 kb on + strand, within H281DRAFT_03893 at 424.616 kb on + strand, within H281DRAFT_03893 at 424.616 kb on + strand, within H281DRAFT_03893 at 424.616 kb on + strand, within H281DRAFT_03893 at 424.616 kb on + strand, within H281DRAFT_03893 at 424.617 kb on - strand, within H281DRAFT_03893 at 424.622 kb on + strand, within H281DRAFT_03893 at 424.622 kb on + strand, within H281DRAFT_03893 at 424.623 kb on - strand, within H281DRAFT_03893 at 424.657 kb on + strand, within H281DRAFT_03893 at 424.689 kb on - strand, within H281DRAFT_03893 at 424.899 kb on + strand at 424.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 422,292 + H281DRAFT_03890 0.34 -1.4 422,293 - H281DRAFT_03890 0.34 +0.4 422,723 - +0.3 422,740 - +0.2 422,747 - +1.3 422,747 - +0.4 422,806 + -0.1 422,806 + +0.1 422,806 + -1.1 422,806 + +0.7 423,015 + H281DRAFT_03891 0.53 -0.1 423,015 + H281DRAFT_03891 0.53 +0.9 423,050 - H281DRAFT_03891 0.68 +0.7 423,063 + H281DRAFT_03891 0.74 -0.6 423,063 + H281DRAFT_03891 0.74 +0.0 423,063 + H281DRAFT_03891 0.74 -0.2 423,063 + H281DRAFT_03891 0.74 +0.2 423,063 + H281DRAFT_03891 0.74 -0.3 423,063 + H281DRAFT_03891 0.74 +1.5 423,064 - H281DRAFT_03891 0.75 +1.5 423,064 - H281DRAFT_03891 0.75 -0.2 423,064 - H281DRAFT_03891 0.75 +0.0 423,064 - H281DRAFT_03891 0.75 +0.3 423,398 + H281DRAFT_03892 0.34 -0.5 423,398 + H281DRAFT_03892 0.34 -1.9 423,399 - H281DRAFT_03892 0.34 +0.5 423,399 - H281DRAFT_03892 0.34 -0.1 423,440 + H281DRAFT_03892 0.39 -0.9 423,447 - H281DRAFT_03892 0.40 -0.8 423,539 + H281DRAFT_03892 0.51 +0.4 423,853 - -1.0 424,003 - -0.1 424,079 + +0.8 424,079 + +1.8 424,079 + +0.2 424,079 + +0.5 424,079 + +0.2 424,079 + +0.1 424,080 - -0.3 424,080 - -0.1 424,080 - -0.0 424,083 + +0.1 424,140 + -1.7 424,140 + -0.0 424,141 - -0.3 424,194 - H281DRAFT_03893 0.14 -0.3 424,194 - H281DRAFT_03893 0.14 +0.1 424,195 + H281DRAFT_03893 0.14 -0.1 424,195 + H281DRAFT_03893 0.14 +0.4 424,196 - H281DRAFT_03893 0.14 +0.5 424,196 - H281DRAFT_03893 0.14 -0.6 424,196 - H281DRAFT_03893 0.14 -0.1 424,196 - H281DRAFT_03893 0.14 +0.6 424,389 - H281DRAFT_03893 0.38 +1.4 424,410 + H281DRAFT_03893 0.40 +0.1 424,410 + H281DRAFT_03893 0.40 +0.9 424,411 - H281DRAFT_03893 0.40 +1.7 424,411 - H281DRAFT_03893 0.40 +0.0 424,411 - H281DRAFT_03893 0.40 +0.1 424,411 - H281DRAFT_03893 0.40 +0.4 424,411 - H281DRAFT_03893 0.40 +0.1 424,413 - H281DRAFT_03893 0.40 -0.0 424,413 - H281DRAFT_03893 0.40 +0.5 424,413 - +0.5 424,413 - H281DRAFT_03893 0.40 -0.1 424,427 + H281DRAFT_03893 0.42 +0.5 424,427 + H281DRAFT_03893 0.42 +0.4 424,427 + H281DRAFT_03893 0.42 +0.0 424,428 - H281DRAFT_03893 0.42 +0.6 424,428 - H281DRAFT_03893 0.42 +0.3 424,438 + H281DRAFT_03893 0.43 -1.0 424,616 + H281DRAFT_03893 0.65 +1.7 424,616 + H281DRAFT_03893 0.65 +0.2 424,616 + H281DRAFT_03893 0.65 +0.7 424,616 + H281DRAFT_03893 0.65 -0.4 424,617 - H281DRAFT_03893 0.65 +1.7 424,622 + H281DRAFT_03893 0.66 +0.4 424,622 + H281DRAFT_03893 0.66 +1.8 424,623 - H281DRAFT_03893 0.66 +0.4 424,657 + H281DRAFT_03893 0.70 +0.5 424,689 - H281DRAFT_03893 0.74 +0.8 424,899 + -0.4 424,900 - +0.1
Or see this region's nucleotide sequence