Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03771 and H281DRAFT_03772 are separated by 308 nucleotides H281DRAFT_03772 and H281DRAFT_03773 overlap by 22 nucleotides H281DRAFT_03773 and H281DRAFT_03774 are separated by 48 nucleotides
H281DRAFT_03771: H281DRAFT_03771 - hypothetical protein, at 288,350 to 288,568
_03771
H281DRAFT_03772: H281DRAFT_03772 - hypothetical protein, at 288,877 to 289,404
_03772
H281DRAFT_03773: H281DRAFT_03773 - serine/threonine protein kinase, at 289,383 to 291,551
_03773
H281DRAFT_03774: H281DRAFT_03774 - Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain, at 291,600 to 293,600
_03774
Position (kb) 289
290
291
292 Strain fitness (log2 ratio) -1
0
1 at 288.670 kb on + strand at 289.527 kb on - strand at 289.552 kb on - strand at 290.017 kb on - strand, within H281DRAFT_03773 at 290.124 kb on + strand, within H281DRAFT_03773 at 290.472 kb on - strand, within H281DRAFT_03773 at 290.474 kb on + strand, within H281DRAFT_03773 at 290.475 kb on - strand, within H281DRAFT_03773 at 291.071 kb on + strand, within H281DRAFT_03773 at 291.222 kb on + strand, within H281DRAFT_03773 at 291.266 kb on + strand, within H281DRAFT_03773 at 291.590 kb on + strand at 292.045 kb on + strand, within H281DRAFT_03774 at 292.251 kb on + strand, within H281DRAFT_03774
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 288,670 + +0.6 289,527 - -0.9 289,552 - -0.7 290,017 - H281DRAFT_03773 0.29 +0.1 290,124 + H281DRAFT_03773 0.34 -0.5 290,472 - H281DRAFT_03773 0.50 -0.3 290,474 + H281DRAFT_03773 0.50 -0.1 290,475 - H281DRAFT_03773 0.50 +0.4 291,071 + H281DRAFT_03773 0.78 -0.8 291,222 + H281DRAFT_03773 0.85 -0.4 291,266 + H281DRAFT_03773 0.87 +0.3 291,590 + -0.1 292,045 + H281DRAFT_03774 0.22 +0.4 292,251 + H281DRAFT_03774 0.33 -0.6
Or see this region's nucleotide sequence