Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03768 and H281DRAFT_03769 are separated by 85 nucleotides H281DRAFT_03769 and H281DRAFT_03770 are separated by 175 nucleotides H281DRAFT_03770 and H281DRAFT_03771 are separated by 328 nucleotides
H281DRAFT_03768: H281DRAFT_03768 - Predicted arabinose efflux permease, MFS family, at 285,710 to 286,939
_03768
H281DRAFT_03769: H281DRAFT_03769 - transcriptional regulator, TetR family, at 287,025 to 287,639
_03769
H281DRAFT_03770: H281DRAFT_03770 - hypothetical protein, at 287,815 to 288,021
_03770
H281DRAFT_03771: H281DRAFT_03771 - hypothetical protein, at 288,350 to 288,568
_03771
Position (kb) 287
288 Strain fitness (log2 ratio) -1
0
1 at 286.206 kb on + strand, within H281DRAFT_03768 at 286.207 kb on - strand, within H281DRAFT_03768 at 286.207 kb on - strand, within H281DRAFT_03768 at 286.258 kb on - strand, within H281DRAFT_03768 at 286.266 kb on + strand, within H281DRAFT_03768 at 286.267 kb on - strand, within H281DRAFT_03768 at 286.442 kb on + strand, within H281DRAFT_03768 at 286.537 kb on + strand, within H281DRAFT_03768 at 286.537 kb on + strand, within H281DRAFT_03768 at 286.819 kb on - strand at 287.027 kb on - strand at 287.146 kb on - strand, within H281DRAFT_03769 at 287.477 kb on - strand, within H281DRAFT_03769 at 287.507 kb on - strand, within H281DRAFT_03769 at 287.689 kb on - strand at 287.699 kb on + strand at 287.822 kb on + strand at 287.822 kb on + strand at 287.823 kb on - strand at 287.823 kb on - strand at 287.823 kb on - strand at 288.072 kb on - strand at 288.219 kb on + strand at 288.380 kb on + strand, within H281DRAFT_03771 at 288.381 kb on - strand, within H281DRAFT_03771 at 288.381 kb on - strand, within H281DRAFT_03771
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 286,206 + H281DRAFT_03768 0.40 -0.3 286,207 - H281DRAFT_03768 0.40 +0.1 286,207 - H281DRAFT_03768 0.40 +0.0 286,258 - H281DRAFT_03768 0.45 -0.9 286,266 + H281DRAFT_03768 0.45 +0.0 286,267 - H281DRAFT_03768 0.45 +0.1 286,442 + H281DRAFT_03768 0.60 +0.4 286,537 + H281DRAFT_03768 0.67 -0.4 286,537 + H281DRAFT_03768 0.67 +0.1 286,819 - +0.8 287,027 - -0.1 287,146 - H281DRAFT_03769 0.20 +0.5 287,477 - H281DRAFT_03769 0.73 +0.4 287,507 - H281DRAFT_03769 0.78 +0.8 287,689 - -1.3 287,699 + -0.3 287,822 + -0.0 287,822 + +0.8 287,823 - -0.2 287,823 - +0.2 287,823 - +0.3 288,072 - -0.3 288,219 + +0.8 288,380 + H281DRAFT_03771 0.14 -0.6 288,381 - H281DRAFT_03771 0.14 -1.6 288,381 - H281DRAFT_03771 0.14 -0.5
Or see this region's nucleotide sequence