Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03632 and H281DRAFT_03633 are separated by 14 nucleotides H281DRAFT_03633 and H281DRAFT_03634 are separated by 439 nucleotides H281DRAFT_03634 and H281DRAFT_03635 are separated by 1 nucleotides
H281DRAFT_03632: H281DRAFT_03632 - transcriptional regulator, IclR family, at 141,665 to 142,675
_03632
H281DRAFT_03633: H281DRAFT_03633 - Outer membrane protein (porin), at 142,690 to 143,763
_03633
H281DRAFT_03634: H281DRAFT_03634 - 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit, at 144,203 to 144,517
_03634
H281DRAFT_03635: H281DRAFT_03635 - hypothetical protein, at 144,519 to 144,830
_03635
Position (kb) 142
143
144 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 141.857 kb on + strand, within H281DRAFT_03632 at 141.858 kb on - strand, within H281DRAFT_03632 at 141.858 kb on - strand, within H281DRAFT_03632 at 141.921 kb on + strand, within H281DRAFT_03632 at 141.967 kb on + strand, within H281DRAFT_03632 at 141.968 kb on - strand, within H281DRAFT_03632 at 141.968 kb on - strand, within H281DRAFT_03632 at 142.035 kb on - strand, within H281DRAFT_03632 at 142.060 kb on - strand, within H281DRAFT_03632 at 142.300 kb on + strand, within H281DRAFT_03632 at 142.325 kb on + strand, within H281DRAFT_03632 at 142.385 kb on + strand, within H281DRAFT_03632 at 142.386 kb on - strand, within H281DRAFT_03632 at 142.793 kb on + strand at 142.794 kb on - strand at 142.808 kb on + strand, within H281DRAFT_03633 at 142.835 kb on + strand, within H281DRAFT_03633 at 142.835 kb on + strand, within H281DRAFT_03633 at 142.835 kb on + strand, within H281DRAFT_03633 at 142.946 kb on + strand, within H281DRAFT_03633 at 142.946 kb on + strand, within H281DRAFT_03633 at 142.997 kb on + strand, within H281DRAFT_03633 at 142.997 kb on + strand, within H281DRAFT_03633 at 142.997 kb on + strand, within H281DRAFT_03633 at 142.998 kb on - strand, within H281DRAFT_03633 at 142.998 kb on - strand, within H281DRAFT_03633 at 143.030 kb on + strand at 143.031 kb on - strand, within H281DRAFT_03633 at 143.031 kb on - strand, within H281DRAFT_03633 at 143.073 kb on - strand, within H281DRAFT_03633 at 143.073 kb on - strand, within H281DRAFT_03633 at 143.073 kb on - strand, within H281DRAFT_03633 at 143.183 kb on + strand, within H281DRAFT_03633 at 143.187 kb on + strand, within H281DRAFT_03633 at 143.188 kb on - strand, within H281DRAFT_03633 at 143.376 kb on - strand, within H281DRAFT_03633 at 143.523 kb on - strand, within H281DRAFT_03633 at 143.575 kb on + strand, within H281DRAFT_03633 at 143.576 kb on - strand, within H281DRAFT_03633 at 143.657 kb on + strand at 143.657 kb on + strand at 143.657 kb on + strand at 143.658 kb on - strand at 143.957 kb on - strand at 143.992 kb on - strand at 144.016 kb on + strand at 144.083 kb on + strand at 144.084 kb on - strand at 144.084 kb on - strand at 144.296 kb on + strand, within H281DRAFT_03634 at 144.296 kb on + strand, within H281DRAFT_03634 at 144.412 kb on - strand, within H281DRAFT_03634 at 144.470 kb on + strand, within H281DRAFT_03634 at 144.633 kb on - strand, within H281DRAFT_03635
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 141,857 + H281DRAFT_03632 0.19 -1.0 141,858 - H281DRAFT_03632 0.19 -1.1 141,858 - H281DRAFT_03632 0.19 -0.9 141,921 + H281DRAFT_03632 0.25 -0.5 141,967 + H281DRAFT_03632 0.30 -1.2 141,968 - H281DRAFT_03632 0.30 -0.0 141,968 - H281DRAFT_03632 0.30 -2.0 142,035 - H281DRAFT_03632 0.37 -0.1 142,060 - H281DRAFT_03632 0.39 -0.7 142,300 + H281DRAFT_03632 0.63 -0.5 142,325 + H281DRAFT_03632 0.65 -0.8 142,385 + H281DRAFT_03632 0.71 +0.1 142,386 - H281DRAFT_03632 0.71 -0.7 142,793 + +0.6 142,794 - +0.3 142,808 + H281DRAFT_03633 0.11 +0.3 142,835 + H281DRAFT_03633 0.14 -0.0 142,835 + H281DRAFT_03633 0.14 -0.5 142,835 + H281DRAFT_03633 0.14 -0.6 142,946 + H281DRAFT_03633 0.24 +0.2 142,946 + H281DRAFT_03633 0.24 +0.3 142,997 + H281DRAFT_03633 0.29 +1.2 142,997 + H281DRAFT_03633 0.29 -0.3 142,997 + H281DRAFT_03633 0.29 -0.2 142,998 - H281DRAFT_03633 0.29 +0.2 142,998 - H281DRAFT_03633 0.29 +1.2 143,030 + -0.1 143,031 - H281DRAFT_03633 0.32 -0.4 143,031 - H281DRAFT_03633 0.32 +0.0 143,073 - H281DRAFT_03633 0.36 +0.3 143,073 - H281DRAFT_03633 0.36 +0.3 143,073 - H281DRAFT_03633 0.36 -0.2 143,183 + H281DRAFT_03633 0.46 -0.6 143,187 + H281DRAFT_03633 0.46 -0.2 143,188 - H281DRAFT_03633 0.46 -0.1 143,376 - H281DRAFT_03633 0.64 -0.3 143,523 - H281DRAFT_03633 0.78 +0.3 143,575 + H281DRAFT_03633 0.82 -1.7 143,576 - H281DRAFT_03633 0.82 -0.5 143,657 + -0.3 143,657 + -0.9 143,657 + -1.7 143,658 - -0.0 143,957 - +0.2 143,992 - -0.8 144,016 + -2.8 144,083 + -1.8 144,084 - -1.3 144,084 - +0.9 144,296 + H281DRAFT_03634 0.30 -2.8 144,296 + H281DRAFT_03634 0.30 -1.3 144,412 - H281DRAFT_03634 0.66 -1.6 144,470 + H281DRAFT_03634 0.85 -0.1 144,633 - H281DRAFT_03635 0.37 -1.8
Or see this region's nucleotide sequence