Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03246 and H281DRAFT_03247 are separated by 91 nucleotides H281DRAFT_03247 and H281DRAFT_03248 are separated by 211 nucleotides
H281DRAFT_03246: H281DRAFT_03246 - iron complex outermembrane recepter protein, at 302,275 to 304,719
_03246
H281DRAFT_03247: H281DRAFT_03247 - Protein of unknown function (DUF2946), at 304,811 to 305,212
_03247
H281DRAFT_03248: H281DRAFT_03248 - Tetratricopeptide (TPR) repeat, at 305,424 to 307,574
_03248
Position (kb) 304
305
306 Strain fitness (log2 ratio) -2
-1
0
1
2 at 303.812 kb on + strand, within H281DRAFT_03246 at 304.030 kb on + strand, within H281DRAFT_03246 at 304.030 kb on + strand, within H281DRAFT_03246 at 304.127 kb on + strand, within H281DRAFT_03246 at 304.274 kb on - strand, within H281DRAFT_03246 at 304.334 kb on + strand, within H281DRAFT_03246 at 304.335 kb on - strand, within H281DRAFT_03246 at 304.335 kb on - strand, within H281DRAFT_03246 at 304.335 kb on - strand, within H281DRAFT_03246 at 305.243 kb on - strand at 305.281 kb on + strand at 305.282 kb on - strand at 305.301 kb on - strand at 305.301 kb on - strand at 305.355 kb on + strand at 305.355 kb on + strand at 305.414 kb on - strand at 305.456 kb on + strand at 305.456 kb on + strand at 305.694 kb on + strand, within H281DRAFT_03248 at 305.695 kb on - strand, within H281DRAFT_03248 at 305.695 kb on - strand, within H281DRAFT_03248 at 305.695 kb on - strand, within H281DRAFT_03248 at 305.695 kb on - strand, within H281DRAFT_03248 at 305.695 kb on - strand, within H281DRAFT_03248 at 305.806 kb on + strand, within H281DRAFT_03248 at 305.807 kb on - strand, within H281DRAFT_03248 at 305.820 kb on + strand, within H281DRAFT_03248 at 305.821 kb on - strand, within H281DRAFT_03248 at 306.020 kb on - strand, within H281DRAFT_03248
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 303,812 + H281DRAFT_03246 0.63 +0.6 304,030 + H281DRAFT_03246 0.72 +1.2 304,030 + H281DRAFT_03246 0.72 -0.4 304,127 + H281DRAFT_03246 0.76 +0.0 304,274 - H281DRAFT_03246 0.82 -0.4 304,334 + H281DRAFT_03246 0.84 +1.3 304,335 - H281DRAFT_03246 0.84 +0.7 304,335 - H281DRAFT_03246 0.84 +1.0 304,335 - H281DRAFT_03246 0.84 +1.1 305,243 - -1.4 305,281 + +0.4 305,282 - +0.6 305,301 - -0.5 305,301 - -1.2 305,355 + -0.9 305,355 + -0.3 305,414 - -0.4 305,456 + -0.4 305,456 + +0.9 305,694 + H281DRAFT_03248 0.13 -0.6 305,695 - H281DRAFT_03248 0.13 +2.1 305,695 - H281DRAFT_03248 0.13 +0.5 305,695 - H281DRAFT_03248 0.13 -0.2 305,695 - H281DRAFT_03248 0.13 -0.5 305,695 - H281DRAFT_03248 0.13 -2.2 305,806 + H281DRAFT_03248 0.18 -0.2 305,807 - H281DRAFT_03248 0.18 +1.3 305,820 + H281DRAFT_03248 0.18 -0.2 305,821 - H281DRAFT_03248 0.18 -0.1 306,020 - H281DRAFT_03248 0.28 +0.9
Or see this region's nucleotide sequence