Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02946 and H281DRAFT_02947 are separated by 101 nucleotides H281DRAFT_02947 and H281DRAFT_02948 are separated by 242 nucleotides H281DRAFT_02948 and H281DRAFT_02949 are separated by 89 nucleotides
H281DRAFT_02946: H281DRAFT_02946 - D-galactonate transporter, at 559,238 to 560,548
_02946
H281DRAFT_02947: H281DRAFT_02947 - hypothetical protein, at 560,650 to 561,213
_02947
H281DRAFT_02948: H281DRAFT_02948 - metabolite-proton symporter, at 561,456 to 562,838
_02948
H281DRAFT_02949: H281DRAFT_02949 - Xaa-Pro aminopeptidase, at 562,928 to 564,094
_02949
Position (kb) 561
562
563 Strain fitness (log2 ratio) -1
0
1 at 560.537 kb on - strand at 560.665 kb on + strand at 560.666 kb on - strand at 561.103 kb on + strand, within H281DRAFT_02947 at 561.168 kb on - strand at 561.426 kb on - strand at 561.426 kb on - strand at 561.604 kb on + strand, within H281DRAFT_02948 at 561.604 kb on + strand, within H281DRAFT_02948 at 561.605 kb on - strand, within H281DRAFT_02948 at 561.605 kb on - strand, within H281DRAFT_02948 at 561.646 kb on + strand at 562.832 kb on + strand at 562.832 kb on + strand at 562.862 kb on + strand at 562.862 kb on + strand at 562.993 kb on + strand at 563.047 kb on + strand at 563.163 kb on + strand, within H281DRAFT_02949 at 563.163 kb on + strand, within H281DRAFT_02949 at 563.424 kb on + strand, within H281DRAFT_02949 at 563.425 kb on - strand, within H281DRAFT_02949 at 563.529 kb on + strand, within H281DRAFT_02949 at 563.718 kb on + strand, within H281DRAFT_02949 at 563.719 kb on - strand, within H281DRAFT_02949 at 563.719 kb on - strand, within H281DRAFT_02949 at 563.719 kb on - strand, within H281DRAFT_02949
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 560,537 - +0.6 560,665 + +0.9 560,666 - +0.0 561,103 + H281DRAFT_02947 0.80 -0.3 561,168 - -1.1 561,426 - +0.5 561,426 - -0.2 561,604 + H281DRAFT_02948 0.11 -0.2 561,604 + H281DRAFT_02948 0.11 -1.0 561,605 - H281DRAFT_02948 0.11 +0.0 561,605 - H281DRAFT_02948 0.11 -0.2 561,646 + -1.3 562,832 + +0.4 562,832 + +0.4 562,862 + +0.3 562,862 + +0.3 562,993 + +1.1 563,047 + -0.4 563,163 + H281DRAFT_02949 0.20 +0.1 563,163 + H281DRAFT_02949 0.20 -1.3 563,424 + H281DRAFT_02949 0.43 +1.1 563,425 - H281DRAFT_02949 0.43 -0.2 563,529 + H281DRAFT_02949 0.51 +0.6 563,718 + H281DRAFT_02949 0.68 -0.1 563,719 - H281DRAFT_02949 0.68 +0.8 563,719 - H281DRAFT_02949 0.68 +0.2 563,719 - H281DRAFT_02949 0.68 -0.2
Or see this region's nucleotide sequence