Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02895 and H281DRAFT_02896 are separated by 56 nucleotides H281DRAFT_02896 and H281DRAFT_02897 are separated by 161 nucleotides H281DRAFT_02897 and H281DRAFT_02898 are separated by 157 nucleotides
H281DRAFT_02895: H281DRAFT_02895 - prolyl 4-hydroxylase, at 498,024 to 498,920
_02895
H281DRAFT_02896: H281DRAFT_02896 - Ketosteroid isomerase-related protein, at 498,977 to 499,456
_02896
H281DRAFT_02897: H281DRAFT_02897 - nicotinamide phosphoribosyltransferase, at 499,618 to 501,066
_02897
H281DRAFT_02898: H281DRAFT_02898 - hypothetical protein, at 501,224 to 501,523
_02898
Position (kb) 499
500
501
502 Strain fitness (log2 ratio) -1
0
1 at 498.647 kb on + strand, within H281DRAFT_02895 at 498.647 kb on + strand, within H281DRAFT_02895 at 498.648 kb on - strand, within H281DRAFT_02895 at 498.648 kb on - strand, within H281DRAFT_02895 at 498.920 kb on + strand at 498.920 kb on + strand at 498.921 kb on - strand at 498.921 kb on - strand at 498.985 kb on + strand at 499.420 kb on - strand at 499.441 kb on + strand at 499.580 kb on - strand at 499.580 kb on - strand at 499.619 kb on + strand at 499.873 kb on - strand, within H281DRAFT_02897 at 500.137 kb on - strand, within H281DRAFT_02897 at 500.137 kb on - strand, within H281DRAFT_02897 at 500.167 kb on + strand, within H281DRAFT_02897 at 500.244 kb on - strand, within H281DRAFT_02897 at 500.394 kb on - strand, within H281DRAFT_02897 at 500.645 kb on + strand, within H281DRAFT_02897 at 500.645 kb on + strand, within H281DRAFT_02897 at 500.645 kb on + strand, within H281DRAFT_02897 at 500.940 kb on - strand at 500.978 kb on + strand at 500.978 kb on + strand at 501.106 kb on + strand at 501.106 kb on + strand at 501.107 kb on - strand at 501.241 kb on - strand at 501.303 kb on + strand, within H281DRAFT_02898 at 501.460 kb on + strand, within H281DRAFT_02898 at 501.588 kb on + strand at 501.752 kb on - strand at 501.752 kb on - strand at 501.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 498,647 + H281DRAFT_02895 0.69 +0.3 498,647 + H281DRAFT_02895 0.69 -0.5 498,648 - H281DRAFT_02895 0.70 +0.2 498,648 - H281DRAFT_02895 0.70 +0.7 498,920 + +1.0 498,920 + -0.3 498,921 - -1.3 498,921 - -0.1 498,985 + -0.3 499,420 - +0.5 499,441 + +0.0 499,580 - -0.5 499,580 - +0.6 499,619 + +0.3 499,873 - H281DRAFT_02897 0.18 -0.3 500,137 - H281DRAFT_02897 0.36 -0.7 500,137 - H281DRAFT_02897 0.36 +0.6 500,167 + H281DRAFT_02897 0.38 -0.5 500,244 - H281DRAFT_02897 0.43 -0.1 500,394 - H281DRAFT_02897 0.54 +0.1 500,645 + H281DRAFT_02897 0.71 +0.5 500,645 + H281DRAFT_02897 0.71 +0.6 500,645 + H281DRAFT_02897 0.71 -0.1 500,940 - +0.4 500,978 + -0.3 500,978 + -0.6 501,106 + +0.0 501,106 + +1.4 501,107 - -0.5 501,241 - +1.6 501,303 + H281DRAFT_02898 0.26 +0.2 501,460 + H281DRAFT_02898 0.79 +0.1 501,588 + +0.8 501,752 - -1.7 501,752 - -0.7 501,752 - -0.7
Or see this region's nucleotide sequence