Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02860 and H281DRAFT_02861 are separated by 5 nucleotides H281DRAFT_02861 and H281DRAFT_02863 are separated by 297 nucleotides
H281DRAFT_02860: H281DRAFT_02860 - cobalt-precorrin-5B (C1)-methyltransferase, at 453,440 to 454,528
_02860
H281DRAFT_02861: H281DRAFT_02861 - precorrin-6Y C5,15-methyltransferase (decarboxylating), at 454,534 to 455,793
_02861
H281DRAFT_02863: H281DRAFT_02863 - precorrin-3B synthase, at 456,091 to 457,698
_02863
Position (kb) 454
455
456 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 453.701 kb on - strand, within H281DRAFT_02860 at 453.787 kb on + strand, within H281DRAFT_02860 at 453.886 kb on + strand, within H281DRAFT_02860 at 453.887 kb on - strand, within H281DRAFT_02860 at 453.904 kb on + strand, within H281DRAFT_02860 at 453.904 kb on + strand, within H281DRAFT_02860 at 453.904 kb on + strand, within H281DRAFT_02860 at 453.904 kb on + strand, within H281DRAFT_02860 at 453.904 kb on + strand, within H281DRAFT_02860 at 453.904 kb on + strand, within H281DRAFT_02860 at 453.905 kb on - strand, within H281DRAFT_02860 at 453.905 kb on - strand, within H281DRAFT_02860 at 453.906 kb on + strand, within H281DRAFT_02860 at 454.098 kb on + strand, within H281DRAFT_02860 at 454.572 kb on + strand at 454.603 kb on + strand at 454.603 kb on + strand at 454.603 kb on + strand at 454.610 kb on + strand at 454.610 kb on + strand at 454.610 kb on + strand at 454.611 kb on - strand at 454.611 kb on - strand at 455.882 kb on + strand at 455.882 kb on + strand at 455.882 kb on + strand at 455.882 kb on + strand at 455.883 kb on - strand at 455.885 kb on + strand at 455.886 kb on - strand at 455.886 kb on - strand at 455.886 kb on - strand at 455.912 kb on - strand at 455.961 kb on + strand at 455.961 kb on + strand at 455.962 kb on - strand at 456.086 kb on + strand at 456.262 kb on - strand, within H281DRAFT_02863
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 453,701 - H281DRAFT_02860 0.24 -3.2 453,787 + H281DRAFT_02860 0.32 -2.6 453,886 + H281DRAFT_02860 0.41 -3.5 453,887 - H281DRAFT_02860 0.41 -5.0 453,904 + H281DRAFT_02860 0.43 -0.7 453,904 + H281DRAFT_02860 0.43 -2.2 453,904 + H281DRAFT_02860 0.43 -2.8 453,904 + H281DRAFT_02860 0.43 -2.9 453,904 + H281DRAFT_02860 0.43 -0.1 453,904 + H281DRAFT_02860 0.43 -2.6 453,905 - H281DRAFT_02860 0.43 -1.5 453,905 - H281DRAFT_02860 0.43 -2.7 453,906 + H281DRAFT_02860 0.43 -1.3 454,098 + H281DRAFT_02860 0.60 -2.5 454,572 + -2.9 454,603 + -2.7 454,603 + -2.3 454,603 + -3.1 454,610 + -1.9 454,610 + -1.3 454,610 + -3.0 454,611 - -2.0 454,611 - -1.7 455,882 + -0.3 455,882 + -4.0 455,882 + +0.1 455,882 + -1.9 455,883 - -1.4 455,885 + +0.1 455,886 - -1.5 455,886 - -1.7 455,886 - -4.4 455,912 - -0.7 455,961 + +2.9 455,961 + +0.3 455,962 - -1.9 456,086 + +0.2 456,262 - H281DRAFT_02863 0.11 -0.9
Or see this region's nucleotide sequence