Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02827 and H281DRAFT_02828 are separated by 211 nucleotides H281DRAFT_02828 and H281DRAFT_02829 are separated by 27 nucleotides H281DRAFT_02829 and H281DRAFT_02830 are separated by 188 nucleotides H281DRAFT_02830 and H281DRAFT_02831 are separated by 20 nucleotides H281DRAFT_02831 and H281DRAFT_02832 are separated by 189 nucleotides H281DRAFT_02832 and H281DRAFT_02833 are separated by 22 nucleotides
H281DRAFT_02827: H281DRAFT_02827 - Uncharacterized protein YjlB, at 422,073 to 422,618
_02827
H281DRAFT_02828: H281DRAFT_02828 - hypothetical protein, at 422,830 to 423,000
_02828
H281DRAFT_02829: H281DRAFT_02829 - hypothetical protein, at 423,028 to 423,288
_02829
H281DRAFT_02830: H281DRAFT_02830 - hypothetical protein, at 423,477 to 423,713
_02830
H281DRAFT_02831: H281DRAFT_02831 - hypothetical protein, at 423,734 to 423,979
_02831
H281DRAFT_02832: H281DRAFT_02832 - hypothetical protein, at 424,169 to 424,381
_02832
H281DRAFT_02833: H281DRAFT_02833 - Cytochrome c, mono- and diheme variants, at 424,404 to 425,720
_02833
Position (kb) 423
424 Strain fitness (log2 ratio) -2
-1
0
1 at 422.506 kb on + strand, within H281DRAFT_02827 at 422.532 kb on - strand, within H281DRAFT_02827 at 422.746 kb on - strand at 422.887 kb on + strand, within H281DRAFT_02828 at 422.888 kb on - strand, within H281DRAFT_02828 at 422.929 kb on - strand, within H281DRAFT_02828 at 422.929 kb on - strand, within H281DRAFT_02828 at 422.929 kb on - strand, within H281DRAFT_02828 at 423.000 kb on + strand at 423.001 kb on - strand at 423.001 kb on - strand at 423.200 kb on + strand, within H281DRAFT_02829 at 423.330 kb on + strand at 423.331 kb on - strand at 423.534 kb on + strand, within H281DRAFT_02830 at 423.534 kb on + strand, within H281DRAFT_02830 at 423.535 kb on - strand, within H281DRAFT_02830 at 423.607 kb on - strand, within H281DRAFT_02830 at 423.897 kb on - strand, within H281DRAFT_02831 at 423.897 kb on - strand, within H281DRAFT_02831 at 423.897 kb on - strand, within H281DRAFT_02831 at 423.897 kb on - strand, within H281DRAFT_02831 at 423.897 kb on - strand, within H281DRAFT_02831 at 423.967 kb on + strand at 423.968 kb on - strand at 423.968 kb on - strand at 423.986 kb on - strand at 424.164 kb on + strand at 424.164 kb on + strand at 424.165 kb on - strand at 424.214 kb on - strand, within H281DRAFT_02832 at 424.214 kb on - strand, within H281DRAFT_02832 at 424.474 kb on + strand at 424.639 kb on + strand at 424.640 kb on - strand, within H281DRAFT_02833
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 422,506 + H281DRAFT_02827 0.79 +0.1 422,532 - H281DRAFT_02827 0.84 -0.7 422,746 - -0.2 422,887 + H281DRAFT_02828 0.33 +0.8 422,888 - H281DRAFT_02828 0.34 -0.3 422,929 - H281DRAFT_02828 0.58 -0.2 422,929 - H281DRAFT_02828 0.58 +0.4 422,929 - H281DRAFT_02828 0.58 +0.0 423,000 + -0.3 423,001 - +0.4 423,001 - -0.8 423,200 + H281DRAFT_02829 0.66 -0.4 423,330 + -1.1 423,331 - -0.6 423,534 + H281DRAFT_02830 0.24 -0.0 423,534 + H281DRAFT_02830 0.24 +0.4 423,535 - H281DRAFT_02830 0.24 -1.4 423,607 - H281DRAFT_02830 0.55 -1.0 423,897 - H281DRAFT_02831 0.66 +0.5 423,897 - H281DRAFT_02831 0.66 +0.7 423,897 - H281DRAFT_02831 0.66 +0.4 423,897 - H281DRAFT_02831 0.66 +1.0 423,897 - H281DRAFT_02831 0.66 +0.6 423,967 + +0.9 423,968 - -1.0 423,968 - +1.1 423,986 - -0.4 424,164 + -2.1 424,164 + -1.0 424,165 - +0.3 424,214 - H281DRAFT_02832 0.21 +1.1 424,214 - H281DRAFT_02832 0.21 +0.8 424,474 + -0.5 424,639 + -0.6 424,640 - H281DRAFT_02833 0.18 -0.1
Or see this region's nucleotide sequence