Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02669 and H281DRAFT_02670 are separated by 237 nucleotides H281DRAFT_02670 and H281DRAFT_02671 are separated by 134 nucleotides H281DRAFT_02671 and H281DRAFT_02672 are separated by 170 nucleotides
H281DRAFT_02669: H281DRAFT_02669 - Arabinose efflux permease, at 249,471 to 250,769
_02669
H281DRAFT_02670: H281DRAFT_02670 - transcriptional regulator, GntR family, at 251,007 to 251,693
_02670
H281DRAFT_02671: H281DRAFT_02671 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 251,828 to 252,232
_02671
H281DRAFT_02672: H281DRAFT_02672 - 3-oxoadipate enol-lactonase, at 252,403 to 253,197
_02672
Position (kb) 251
252 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 250.444 kb on + strand, within H281DRAFT_02669 at 250.445 kb on - strand, within H281DRAFT_02669 at 250.553 kb on - strand, within H281DRAFT_02669 at 250.589 kb on + strand, within H281DRAFT_02669 at 250.590 kb on - strand, within H281DRAFT_02669 at 250.590 kb on - strand, within H281DRAFT_02669 at 250.590 kb on - strand, within H281DRAFT_02669 at 250.590 kb on - strand, within H281DRAFT_02669 at 250.623 kb on + strand, within H281DRAFT_02669 at 250.828 kb on - strand at 250.982 kb on + strand at 250.982 kb on + strand at 250.983 kb on - strand at 250.983 kb on - strand at 251.140 kb on + strand, within H281DRAFT_02670 at 251.175 kb on - strand at 251.175 kb on - strand, within H281DRAFT_02670 at 251.263 kb on + strand, within H281DRAFT_02670 at 251.637 kb on + strand at 251.637 kb on + strand at 251.638 kb on - strand at 251.681 kb on + strand at 251.681 kb on + strand at 251.681 kb on + strand at 251.687 kb on + strand at 251.687 kb on + strand at 251.718 kb on - strand at 251.823 kb on + strand at 251.887 kb on - strand, within H281DRAFT_02671 at 251.902 kb on + strand, within H281DRAFT_02671 at 251.964 kb on + strand, within H281DRAFT_02671 at 251.964 kb on + strand, within H281DRAFT_02671 at 251.964 kb on + strand, within H281DRAFT_02671 at 251.964 kb on + strand, within H281DRAFT_02671 at 251.965 kb on - strand, within H281DRAFT_02671 at 251.965 kb on - strand, within H281DRAFT_02671 at 252.074 kb on - strand, within H281DRAFT_02671 at 252.143 kb on + strand, within H281DRAFT_02671 at 252.143 kb on + strand at 252.144 kb on - strand, within H281DRAFT_02671 at 252.395 kb on + strand at 252.449 kb on - strand at 252.547 kb on + strand, within H281DRAFT_02672 at 252.547 kb on + strand, within H281DRAFT_02672 at 252.547 kb on + strand, within H281DRAFT_02672 at 252.548 kb on - strand, within H281DRAFT_02672 at 252.548 kb on - strand, within H281DRAFT_02672 at 252.548 kb on - strand, within H281DRAFT_02672
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 250,444 + H281DRAFT_02669 0.75 +0.6 250,445 - H281DRAFT_02669 0.75 -0.2 250,553 - H281DRAFT_02669 0.83 +1.0 250,589 + H281DRAFT_02669 0.86 +1.2 250,590 - H281DRAFT_02669 0.86 -0.5 250,590 - H281DRAFT_02669 0.86 -0.6 250,590 - H281DRAFT_02669 0.86 +0.8 250,590 - H281DRAFT_02669 0.86 +2.0 250,623 + H281DRAFT_02669 0.89 -0.2 250,828 - +0.5 250,982 + +0.9 250,982 + -0.1 250,983 - +0.3 250,983 - +0.7 251,140 + H281DRAFT_02670 0.19 -1.8 251,175 - +0.1 251,175 - H281DRAFT_02670 0.24 -2.5 251,263 + H281DRAFT_02670 0.37 -0.2 251,637 + -1.5 251,637 + -0.4 251,638 - +0.1 251,681 + -0.2 251,681 + -1.4 251,681 + -1.6 251,687 + -0.9 251,687 + -0.8 251,718 - +3.4 251,823 + +0.5 251,887 - H281DRAFT_02671 0.15 -0.3 251,902 + H281DRAFT_02671 0.18 +0.3 251,964 + H281DRAFT_02671 0.34 +0.1 251,964 + H281DRAFT_02671 0.34 -0.7 251,964 + H281DRAFT_02671 0.34 +0.0 251,964 + H281DRAFT_02671 0.34 -1.0 251,965 - H281DRAFT_02671 0.34 -2.1 251,965 - H281DRAFT_02671 0.34 -0.1 252,074 - H281DRAFT_02671 0.61 -0.6 252,143 + H281DRAFT_02671 0.78 +1.1 252,143 + +2.0 252,144 - H281DRAFT_02671 0.78 -0.7 252,395 + +0.5 252,449 - -1.0 252,547 + H281DRAFT_02672 0.18 -0.3 252,547 + H281DRAFT_02672 0.18 +0.4 252,547 + H281DRAFT_02672 0.18 +0.0 252,548 - H281DRAFT_02672 0.18 +0.2 252,548 - H281DRAFT_02672 0.18 -1.3 252,548 - H281DRAFT_02672 0.18 -1.0
Or see this region's nucleotide sequence