Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02464 and H281DRAFT_02465 are separated by 45 nucleotides H281DRAFT_02465 and H281DRAFT_02466 are separated by 238 nucleotides
H281DRAFT_02464: H281DRAFT_02464 - betaine aldehyde dehydrogenase, at 32,179 to 33,648
_02464
H281DRAFT_02465: H281DRAFT_02465 - transcriptional regulator, TetR family, at 33,694 to 34,287
_02465
H281DRAFT_02466: H281DRAFT_02466 - glutathione-independent formaldehyde dehydrogenase, at 34,526 to 35,725
_02466
Position (kb) 33
34
35 Strain fitness (log2 ratio) -1
0
1 at 32.763 kb on + strand, within H281DRAFT_02464 at 32.763 kb on + strand, within H281DRAFT_02464 at 32.764 kb on - strand, within H281DRAFT_02464 at 33.075 kb on - strand, within H281DRAFT_02464 at 33.306 kb on - strand, within H281DRAFT_02464 at 33.605 kb on + strand at 33.605 kb on + strand at 33.606 kb on - strand at 33.606 kb on - strand at 33.621 kb on - strand at 33.749 kb on - strand at 33.912 kb on - strand, within H281DRAFT_02465 at 33.912 kb on - strand, within H281DRAFT_02465 at 33.912 kb on - strand, within H281DRAFT_02465 at 34.143 kb on - strand, within H281DRAFT_02465 at 34.381 kb on + strand at 34.550 kb on + strand at 34.551 kb on - strand at 34.661 kb on - strand, within H281DRAFT_02466 at 34.681 kb on + strand, within H281DRAFT_02466 at 34.902 kb on - strand, within H281DRAFT_02466 at 34.902 kb on - strand, within H281DRAFT_02466 at 35.096 kb on + strand, within H281DRAFT_02466
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 32,763 + H281DRAFT_02464 0.40 -0.4 32,763 + H281DRAFT_02464 0.40 -0.4 32,764 - H281DRAFT_02464 0.40 +0.7 33,075 - H281DRAFT_02464 0.61 -1.6 33,306 - H281DRAFT_02464 0.77 +0.0 33,605 + -0.4 33,605 + +0.1 33,606 - +0.2 33,606 - -0.6 33,621 - -0.2 33,749 - -0.2 33,912 - H281DRAFT_02465 0.37 -0.1 33,912 - H281DRAFT_02465 0.37 -0.8 33,912 - H281DRAFT_02465 0.37 -0.3 34,143 - H281DRAFT_02465 0.76 -0.5 34,381 + +0.6 34,550 + -1.1 34,551 - -0.6 34,661 - H281DRAFT_02466 0.11 -0.4 34,681 + H281DRAFT_02466 0.13 +0.0 34,902 - H281DRAFT_02466 0.31 -0.2 34,902 - H281DRAFT_02466 0.31 -0.1 35,096 + H281DRAFT_02466 0.47 +0.6
Or see this region's nucleotide sequence