Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02449 and H281DRAFT_02450 are separated by 465 nucleotides H281DRAFT_02450 and H281DRAFT_02451 overlap by 8 nucleotides H281DRAFT_02451 and H281DRAFT_02452 are separated by 7 nucleotides
H281DRAFT_02449: H281DRAFT_02449 - hypothetical protein, at 13,956 to 14,273
_02449
H281DRAFT_02450: H281DRAFT_02450 - glycine betaine/proline transport system ATP-binding protein, at 14,739 to 15,920
_02450
H281DRAFT_02451: H281DRAFT_02451 - glycine betaine/proline transport system permease protein, at 15,913 to 16,815
_02451
H281DRAFT_02452: H281DRAFT_02452 - transcriptional regulator, AraC family with amidase-like domain, at 16,823 to 17,821
_02452
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1 at 13.836 kb on - strand at 13.851 kb on - strand at 13.917 kb on - strand at 13.940 kb on + strand at 13.941 kb on - strand at 14.118 kb on - strand, within H281DRAFT_02449 at 14.163 kb on - strand, within H281DRAFT_02449 at 14.271 kb on + strand at 14.278 kb on + strand at 14.418 kb on + strand at 14.478 kb on - strand at 14.643 kb on + strand at 14.643 kb on + strand at 14.647 kb on + strand at 14.647 kb on + strand at 14.648 kb on - strand at 14.648 kb on - strand at 14.648 kb on - strand at 14.725 kb on + strand at 14.726 kb on - strand at 14.881 kb on + strand, within H281DRAFT_02450 at 14.881 kb on + strand, within H281DRAFT_02450 at 14.881 kb on + strand, within H281DRAFT_02450 at 15.753 kb on + strand, within H281DRAFT_02450 at 15.753 kb on + strand, within H281DRAFT_02450 at 16.089 kb on - strand, within H281DRAFT_02451 at 16.325 kb on - strand, within H281DRAFT_02451 at 16.341 kb on + strand, within H281DRAFT_02451 at 16.342 kb on - strand, within H281DRAFT_02451
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 13,836 - -0.2 13,851 - +0.4 13,917 - +0.4 13,940 + +0.1 13,941 - -0.2 14,118 - H281DRAFT_02449 0.51 -0.5 14,163 - H281DRAFT_02449 0.65 +0.4 14,271 + +0.8 14,278 + -0.1 14,418 + +0.5 14,478 - +0.5 14,643 + +0.1 14,643 + +0.7 14,647 + -0.3 14,647 + -0.3 14,648 - -0.2 14,648 - -0.0 14,648 - +1.1 14,725 + +0.6 14,726 - -0.9 14,881 + H281DRAFT_02450 0.12 -0.2 14,881 + H281DRAFT_02450 0.12 -1.3 14,881 + H281DRAFT_02450 0.12 -1.9 15,753 + H281DRAFT_02450 0.86 -0.2 15,753 + H281DRAFT_02450 0.86 +1.0 16,089 - H281DRAFT_02451 0.19 -0.9 16,325 - H281DRAFT_02451 0.46 -0.0 16,341 + H281DRAFT_02451 0.47 -0.4 16,342 - H281DRAFT_02451 0.48 -1.4
Or see this region's nucleotide sequence