Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02337 and H281DRAFT_02338 overlap by 4 nucleotides H281DRAFT_02338 and H281DRAFT_02339 are separated by 302 nucleotides
H281DRAFT_02337: H281DRAFT_02337 - AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase, at 494,387 to 495,562
_02337
H281DRAFT_02338: H281DRAFT_02338 - DNA-3-methyladenine glycosylase II, at 495,559 to 496,476
_02338
H281DRAFT_02339: H281DRAFT_02339 - glutamate-cysteine ligase, at 496,779 to 498,425
_02339
Position (kb) 495
496
497 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 494.814 kb on - strand, within H281DRAFT_02337 at 494.814 kb on - strand, within H281DRAFT_02337 at 494.918 kb on + strand, within H281DRAFT_02337 at 494.918 kb on + strand, within H281DRAFT_02337 at 494.918 kb on + strand, within H281DRAFT_02337 at 494.961 kb on - strand, within H281DRAFT_02337 at 494.961 kb on - strand, within H281DRAFT_02337 at 495.291 kb on - strand, within H281DRAFT_02337 at 495.599 kb on - strand at 495.685 kb on + strand, within H281DRAFT_02338 at 495.953 kb on + strand, within H281DRAFT_02338 at 495.954 kb on - strand, within H281DRAFT_02338 at 495.954 kb on - strand, within H281DRAFT_02338 at 496.181 kb on + strand, within H281DRAFT_02338 at 496.182 kb on - strand, within H281DRAFT_02338 at 496.229 kb on + strand, within H281DRAFT_02338 at 496.229 kb on + strand, within H281DRAFT_02338 at 496.267 kb on + strand, within H281DRAFT_02338 at 496.268 kb on - strand, within H281DRAFT_02338 at 496.415 kb on - strand at 496.595 kb on + strand at 496.704 kb on + strand at 496.704 kb on + strand at 496.705 kb on - strand at 496.915 kb on + strand at 497.109 kb on + strand, within H281DRAFT_02339 at 497.109 kb on + strand, within H281DRAFT_02339 at 497.110 kb on - strand, within H281DRAFT_02339 at 497.110 kb on - strand, within H281DRAFT_02339 at 497.196 kb on + strand, within H281DRAFT_02339 at 497.196 kb on + strand, within H281DRAFT_02339 at 497.197 kb on - strand, within H281DRAFT_02339 at 497.197 kb on - strand, within H281DRAFT_02339 at 497.226 kb on + strand, within H281DRAFT_02339 at 497.226 kb on + strand, within H281DRAFT_02339 at 497.226 kb on + strand, within H281DRAFT_02339 at 497.227 kb on - strand, within H281DRAFT_02339 at 497.227 kb on - strand, within H281DRAFT_02339 at 497.227 kb on - strand, within H281DRAFT_02339 at 497.227 kb on - strand, within H281DRAFT_02339 at 497.227 kb on - strand, within H281DRAFT_02339 at 497.233 kb on - strand, within H281DRAFT_02339 at 497.293 kb on - strand, within H281DRAFT_02339 at 497.293 kb on - strand, within H281DRAFT_02339 at 497.298 kb on + strand, within H281DRAFT_02339 at 497.299 kb on - strand, within H281DRAFT_02339 at 497.299 kb on - strand at 497.382 kb on + strand, within H281DRAFT_02339 at 497.430 kb on + strand, within H281DRAFT_02339 at 497.430 kb on + strand, within H281DRAFT_02339 at 497.430 kb on + strand, within H281DRAFT_02339 at 497.430 kb on + strand, within H281DRAFT_02339 at 497.430 kb on + strand, within H281DRAFT_02339 at 497.430 kb on + strand, within H281DRAFT_02339 at 497.431 kb on - strand, within H281DRAFT_02339 at 497.431 kb on - strand, within H281DRAFT_02339 at 497.431 kb on - strand, within H281DRAFT_02339
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 494,814 - H281DRAFT_02337 0.36 -0.5 494,814 - H281DRAFT_02337 0.36 +0.2 494,918 + H281DRAFT_02337 0.45 +0.1 494,918 + H281DRAFT_02337 0.45 -0.0 494,918 + H281DRAFT_02337 0.45 -0.5 494,961 - H281DRAFT_02337 0.49 +0.3 494,961 - H281DRAFT_02337 0.49 +0.8 495,291 - H281DRAFT_02337 0.77 -0.1 495,599 - +1.5 495,685 + H281DRAFT_02338 0.14 +0.5 495,953 + H281DRAFT_02338 0.43 -0.8 495,954 - H281DRAFT_02338 0.43 -0.5 495,954 - H281DRAFT_02338 0.43 -0.2 496,181 + H281DRAFT_02338 0.68 +0.2 496,182 - H281DRAFT_02338 0.68 -0.4 496,229 + H281DRAFT_02338 0.73 -0.1 496,229 + H281DRAFT_02338 0.73 +0.0 496,267 + H281DRAFT_02338 0.77 +1.2 496,268 - H281DRAFT_02338 0.77 +0.3 496,415 - +0.4 496,595 + +0.2 496,704 + +1.0 496,704 + -0.7 496,705 - -0.5 496,915 + -1.8 497,109 + H281DRAFT_02339 0.20 -2.5 497,109 + H281DRAFT_02339 0.20 -1.3 497,110 - H281DRAFT_02339 0.20 -4.2 497,110 - H281DRAFT_02339 0.20 -1.6 497,196 + H281DRAFT_02339 0.25 -0.6 497,196 + H281DRAFT_02339 0.25 -1.9 497,197 - H281DRAFT_02339 0.25 -1.3 497,197 - H281DRAFT_02339 0.25 -3.0 497,226 + H281DRAFT_02339 0.27 -3.2 497,226 + H281DRAFT_02339 0.27 -2.8 497,226 + H281DRAFT_02339 0.27 -1.7 497,227 - H281DRAFT_02339 0.27 -2.0 497,227 - H281DRAFT_02339 0.27 -3.0 497,227 - H281DRAFT_02339 0.27 -1.3 497,227 - H281DRAFT_02339 0.27 -2.5 497,227 - H281DRAFT_02339 0.27 -1.5 497,233 - H281DRAFT_02339 0.28 -3.3 497,293 - H281DRAFT_02339 0.31 -1.9 497,293 - H281DRAFT_02339 0.31 -3.0 497,298 + H281DRAFT_02339 0.32 -1.6 497,299 - H281DRAFT_02339 0.32 -0.3 497,299 - -0.6 497,382 + H281DRAFT_02339 0.37 -1.7 497,430 + H281DRAFT_02339 0.40 -4.3 497,430 + H281DRAFT_02339 0.40 -2.6 497,430 + H281DRAFT_02339 0.40 -1.4 497,430 + H281DRAFT_02339 0.40 -1.8 497,430 + H281DRAFT_02339 0.40 -2.7 497,430 + H281DRAFT_02339 0.40 -2.6 497,431 - H281DRAFT_02339 0.40 -2.0 497,431 - H281DRAFT_02339 0.40 -3.8 497,431 - H281DRAFT_02339 0.40 -3.0
Or see this region's nucleotide sequence