Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02323

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02321 and H281DRAFT_02322 are separated by 243 nucleotidesH281DRAFT_02322 and H281DRAFT_02323 are separated by 90 nucleotidesH281DRAFT_02323 and H281DRAFT_02324 are separated by 114 nucleotides H281DRAFT_02321: H281DRAFT_02321 - Site-specific recombinase XerD, at 477,045 to 478,256 _02321 H281DRAFT_02322: H281DRAFT_02322 - hypothetical protein, at 478,500 to 478,661 _02322 H281DRAFT_02323: H281DRAFT_02323 - hypothetical protein, at 478,752 to 479,096 _02323 H281DRAFT_02324: H281DRAFT_02324 - pyruvate dehydrogenase E1 component, at 479,211 to 481,946 _02324 Position (kb) 478 479 480Strain fitness (log2 ratio) -2 -1 0 1 2at 477.776 kb on - strand, within H281DRAFT_02321at 477.866 kb on + strand, within H281DRAFT_02321at 477.867 kb on - strand, within H281DRAFT_02321at 477.867 kb on - strand, within H281DRAFT_02321at 477.883 kb on - strand, within H281DRAFT_02321at 477.962 kb on - strand, within H281DRAFT_02321at 477.962 kb on - strand, within H281DRAFT_02321at 477.962 kb on - strand, within H281DRAFT_02321at 477.962 kb on - strand, within H281DRAFT_02321at 477.962 kb on - strand, within H281DRAFT_02321at 478.277 kb on + strandat 478.277 kb on + strandat 478.278 kb on - strandat 478.278 kb on - strandat 478.278 kb on - strandat 478.307 kb on + strandat 478.385 kb on + strandat 478.386 kb on - strandat 478.461 kb on - strandat 478.522 kb on - strand, within H281DRAFT_02322at 478.522 kb on - strand, within H281DRAFT_02322at 478.746 kb on + strandat 478.747 kb on - strandat 478.753 kb on + strandat 478.753 kb on + strandat 478.753 kb on + strandat 478.753 kb on + strandat 478.753 kb on + strandat 478.754 kb on - strandat 478.754 kb on - strandat 478.772 kb on + strandat 478.772 kb on + strandat 478.773 kb on - strandat 478.773 kb on - strandat 478.777 kb on + strandat 478.777 kb on + strandat 478.783 kb on + strandat 478.783 kb on + strandat 478.813 kb on + strand, within H281DRAFT_02323at 478.814 kb on - strand, within H281DRAFT_02323at 478.834 kb on + strand, within H281DRAFT_02323at 478.840 kb on + strand, within H281DRAFT_02323at 478.879 kb on + strand, within H281DRAFT_02323at 478.879 kb on + strand, within H281DRAFT_02323at 478.879 kb on + strand, within H281DRAFT_02323at 478.895 kb on - strand, within H281DRAFT_02323at 478.909 kb on + strand, within H281DRAFT_02323at 478.924 kb on + strand, within H281DRAFT_02323at 478.925 kb on - strand, within H281DRAFT_02323at 479.002 kb on - strand, within H281DRAFT_02323at 479.002 kb on - strand, within H281DRAFT_02323at 479.085 kb on + strandat 479.086 kb on - strandat 479.151 kb on + strandat 479.151 kb on + strandat 479.151 kb on + strandat 479.152 kb on - strandat 479.167 kb on + strandat 479.178 kb on + strandat 479.178 kb on + strandat 479.179 kb on - strandat 479.307 kb on + strandat 479.431 kb on + strandat 479.432 kb on - strandat 479.464 kb on + strandat 479.518 kb on + strand, within H281DRAFT_02324at 479.518 kb on + strand, within H281DRAFT_02324at 479.518 kb on + strand, within H281DRAFT_02324at 479.519 kb on - strand, within H281DRAFT_02324at 479.675 kb on + strand, within H281DRAFT_02324at 479.675 kb on + strand, within H281DRAFT_02324at 479.676 kb on - strand, within H281DRAFT_02324at 479.741 kb on - strand, within H281DRAFT_02324at 479.741 kb on - strand, within H281DRAFT_02324at 479.775 kb on + strand, within H281DRAFT_02324at 479.775 kb on + strand, within H281DRAFT_02324at 479.776 kb on - strand, within H281DRAFT_02324at 479.776 kb on - strand, within H281DRAFT_02324at 479.807 kb on - strand, within H281DRAFT_02324at 479.830 kb on + strand, within H281DRAFT_02324at 479.830 kb on + strand, within H281DRAFT_02324at 479.831 kb on - strand, within H281DRAFT_02324at 479.831 kb on - strand, within H281DRAFT_02324at 479.834 kb on - strandat 479.834 kb on - strand, within H281DRAFT_02324at 479.834 kb on - strand, within H281DRAFT_02324at 480.094 kb on + strand, within H281DRAFT_02324at 480.095 kb on - strand, within H281DRAFT_02324at 480.095 kb on - strand, within H281DRAFT_02324

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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477,776 - H281DRAFT_02321 0.60 +0.4
477,866 + H281DRAFT_02321 0.68 -0.0
477,867 - H281DRAFT_02321 0.68 +0.4
477,867 - H281DRAFT_02321 0.68 -0.7
477,883 - H281DRAFT_02321 0.69 +0.5
477,962 - H281DRAFT_02321 0.76 +1.8
477,962 - H281DRAFT_02321 0.76 +0.0
477,962 - H281DRAFT_02321 0.76 +0.0
477,962 - H281DRAFT_02321 0.76 +0.0
477,962 - H281DRAFT_02321 0.76 -0.7
478,277 + -0.2
478,277 + -0.2
478,278 - -0.5
478,278 - +0.6
478,278 - +0.2
478,307 + -0.6
478,385 + -0.2
478,386 - -0.5
478,461 - +0.6
478,522 - H281DRAFT_02322 0.14 -0.4
478,522 - H281DRAFT_02322 0.14 +0.4
478,746 + -0.7
478,747 - -1.0
478,753 + +0.5
478,753 + -0.0
478,753 + -0.1
478,753 + +0.4
478,753 + -0.3
478,754 - +0.7
478,754 - -0.3
478,772 + -0.9
478,772 + +0.8
478,773 - -0.5
478,773 - -0.0
478,777 + -0.1
478,777 + +0.3
478,783 + +1.0
478,783 + +0.3
478,813 + H281DRAFT_02323 0.18 +0.2
478,814 - H281DRAFT_02323 0.18 +0.1
478,834 + H281DRAFT_02323 0.24 +1.6
478,840 + H281DRAFT_02323 0.26 +0.4
478,879 + H281DRAFT_02323 0.37 -0.2
478,879 + H281DRAFT_02323 0.37 +0.0
478,879 + H281DRAFT_02323 0.37 +0.5
478,895 - H281DRAFT_02323 0.41 +0.4
478,909 + H281DRAFT_02323 0.46 -0.4
478,924 + H281DRAFT_02323 0.50 -0.0
478,925 - H281DRAFT_02323 0.50 +1.8
479,002 - H281DRAFT_02323 0.72 +0.9
479,002 - H281DRAFT_02323 0.72 -1.6
479,085 + -0.1
479,086 - +0.5
479,151 + +0.3
479,151 + -0.1
479,151 + +0.3
479,152 - -0.4
479,167 + +0.8
479,178 + -0.3
479,178 + +2.3
479,179 - +0.2
479,307 + +0.1
479,431 + -0.6
479,432 - +1.0
479,464 + +0.3
479,518 + H281DRAFT_02324 0.11 -0.6
479,518 + H281DRAFT_02324 0.11 +0.7
479,518 + H281DRAFT_02324 0.11 -2.5
479,519 - H281DRAFT_02324 0.11 +0.0
479,675 + H281DRAFT_02324 0.17 +0.6
479,675 + H281DRAFT_02324 0.17 -0.3
479,676 - H281DRAFT_02324 0.17 -0.0
479,741 - H281DRAFT_02324 0.19 -0.1
479,741 - H281DRAFT_02324 0.19 -0.7
479,775 + H281DRAFT_02324 0.21 -0.4
479,775 + H281DRAFT_02324 0.21 +0.2
479,776 - H281DRAFT_02324 0.21 +0.5
479,776 - H281DRAFT_02324 0.21 -0.6
479,807 - H281DRAFT_02324 0.22 +2.0
479,830 + H281DRAFT_02324 0.23 -1.1
479,830 + H281DRAFT_02324 0.23 +0.3
479,831 - H281DRAFT_02324 0.23 +0.5
479,831 - H281DRAFT_02324 0.23 +0.5
479,834 - +0.2
479,834 - H281DRAFT_02324 0.23 -0.6
479,834 - H281DRAFT_02324 0.23 -0.1
480,094 + H281DRAFT_02324 0.32 +0.8
480,095 - H281DRAFT_02324 0.32 +0.2
480,095 - H281DRAFT_02324 0.32 +0.7

Or see this region's nucleotide sequence