Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02309 and H281DRAFT_02310 are separated by 111 nucleotides H281DRAFT_02310 and H281DRAFT_02311 are separated by 28 nucleotides H281DRAFT_02311 and H281DRAFT_02312 are separated by 2 nucleotides
H281DRAFT_02309: H281DRAFT_02309 - Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion, at 459,902 to 460,189
_02309
H281DRAFT_02310: H281DRAFT_02310 - hypothetical protein, at 460,301 to 461,080
_02310
H281DRAFT_02311: H281DRAFT_02311 - hypothetical protein, at 461,109 to 462,521
_02311
H281DRAFT_02312: H281DRAFT_02312 - type VI secretion system secreted protein VgrG, at 462,524 to 465,202
_02312
Position (kb) 461
462
463 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 460.177 kb on + strand at 460.177 kb on + strand at 460.177 kb on + strand at 460.177 kb on + strand at 460.178 kb on - strand at 460.178 kb on - strand at 460.193 kb on + strand at 460.193 kb on + strand at 460.193 kb on + strand at 460.194 kb on - strand at 460.194 kb on - strand at 460.194 kb on - strand at 460.195 kb on + strand at 460.195 kb on + strand at 460.195 kb on + strand at 460.195 kb on + strand at 460.196 kb on - strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.285 kb on - strand at 460.285 kb on - strand at 460.302 kb on + strand at 461.119 kb on + strand at 461.119 kb on + strand at 461.119 kb on + strand at 461.119 kb on + strand at 461.119 kb on + strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.140 kb on + strand at 461.140 kb on + strand at 461.140 kb on + strand at 461.140 kb on + strand at 461.141 kb on - strand at 461.167 kb on + strand at 461.295 kb on + strand, within H281DRAFT_02311 at 461.295 kb on + strand, within H281DRAFT_02311 at 461.295 kb on + strand, within H281DRAFT_02311 at 461.296 kb on - strand, within H281DRAFT_02311 at 461.296 kb on - strand, within H281DRAFT_02311 at 461.296 kb on - strand, within H281DRAFT_02311 at 461.298 kb on + strand, within H281DRAFT_02311 at 461.363 kb on + strand, within H281DRAFT_02311 at 461.363 kb on + strand, within H281DRAFT_02311 at 461.363 kb on + strand, within H281DRAFT_02311 at 461.364 kb on - strand, within H281DRAFT_02311 at 461.364 kb on - strand, within H281DRAFT_02311 at 461.364 kb on - strand, within H281DRAFT_02311 at 461.470 kb on + strand, within H281DRAFT_02311 at 461.471 kb on - strand, within H281DRAFT_02311 at 461.493 kb on - strand, within H281DRAFT_02311 at 461.657 kb on + strand, within H281DRAFT_02311 at 461.657 kb on + strand, within H281DRAFT_02311 at 461.657 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.690 kb on - strand, within H281DRAFT_02311 at 461.690 kb on - strand, within H281DRAFT_02311 at 461.690 kb on - strand, within H281DRAFT_02311 at 461.728 kb on - strand at 461.728 kb on - strand, within H281DRAFT_02311 at 461.728 kb on - strand, within H281DRAFT_02311 at 461.808 kb on + strand, within H281DRAFT_02311 at 461.808 kb on + strand, within H281DRAFT_02311 at 461.808 kb on + strand, within H281DRAFT_02311 at 461.809 kb on - strand, within H281DRAFT_02311 at 461.812 kb on - strand, within H281DRAFT_02311 at 461.837 kb on + strand, within H281DRAFT_02311 at 461.837 kb on + strand, within H281DRAFT_02311 at 461.837 kb on + strand, within H281DRAFT_02311 at 461.838 kb on - strand, within H281DRAFT_02311 at 461.838 kb on - strand, within H281DRAFT_02311 at 461.838 kb on - strand, within H281DRAFT_02311 at 461.838 kb on - strand, within H281DRAFT_02311 at 461.844 kb on + strand, within H281DRAFT_02311 at 461.844 kb on + strand, within H281DRAFT_02311 at 461.845 kb on - strand, within H281DRAFT_02311 at 461.845 kb on - strand, within H281DRAFT_02311 at 461.845 kb on - strand, within H281DRAFT_02311 at 461.852 kb on + strand, within H281DRAFT_02311 at 461.852 kb on + strand, within H281DRAFT_02311 at 461.852 kb on + strand, within H281DRAFT_02311 at 462.037 kb on + strand, within H281DRAFT_02311 at 462.037 kb on + strand, within H281DRAFT_02311 at 462.038 kb on - strand, within H281DRAFT_02311 at 462.038 kb on - strand, within H281DRAFT_02311 at 462.061 kb on + strand, within H281DRAFT_02311 at 462.061 kb on + strand, within H281DRAFT_02311 at 462.062 kb on - strand at 462.062 kb on - strand, within H281DRAFT_02311 at 462.062 kb on - strand, within H281DRAFT_02311 at 462.083 kb on + strand, within H281DRAFT_02311 at 462.083 kb on + strand, within H281DRAFT_02311 at 462.084 kb on - strand, within H281DRAFT_02311 at 462.186 kb on - strand, within H281DRAFT_02311 at 462.193 kb on - strand, within H281DRAFT_02311 at 462.214 kb on + strand, within H281DRAFT_02311 at 462.214 kb on + strand, within H281DRAFT_02311 at 462.214 kb on + strand, within H281DRAFT_02311 at 462.215 kb on - strand, within H281DRAFT_02311 at 462.215 kb on - strand, within H281DRAFT_02311 at 462.215 kb on - strand, within H281DRAFT_02311 at 462.246 kb on + strand, within H281DRAFT_02311 at 462.247 kb on - strand, within H281DRAFT_02311 at 462.286 kb on + strand, within H281DRAFT_02311 at 462.287 kb on - strand, within H281DRAFT_02311 at 462.287 kb on - strand, within H281DRAFT_02311 at 462.343 kb on + strand, within H281DRAFT_02311 at 462.343 kb on + strand, within H281DRAFT_02311 at 462.343 kb on + strand, within H281DRAFT_02311 at 462.344 kb on - strand, within H281DRAFT_02311 at 462.368 kb on + strand, within H281DRAFT_02311 at 462.368 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.494 kb on + strand at 462.495 kb on - strand at 462.495 kb on - strand at 462.495 kb on - strand at 462.495 kb on - strand at 462.525 kb on + strand at 462.616 kb on + strand at 462.616 kb on + strand at 462.616 kb on + strand at 462.616 kb on + strand at 462.617 kb on - strand at 462.685 kb on + strand at 462.685 kb on + strand at 462.685 kb on + strand at 462.687 kb on + strand at 462.687 kb on + strand at 462.688 kb on - strand at 462.688 kb on - strand at 462.688 kb on - strand at 462.726 kb on + strand at 462.726 kb on + strand at 462.726 kb on + strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.770 kb on - strand at 462.830 kb on - strand, within H281DRAFT_02312 at 462.830 kb on - strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.847 kb on + strand, within H281DRAFT_02312 at 462.847 kb on + strand, within H281DRAFT_02312 at 462.847 kb on + strand, within H281DRAFT_02312 at 462.848 kb on - strand, within H281DRAFT_02312 at 462.899 kb on + strand, within H281DRAFT_02312 at 462.900 kb on - strand, within H281DRAFT_02312 at 462.900 kb on - strand, within H281DRAFT_02312 at 462.900 kb on - strand, within H281DRAFT_02312 at 462.934 kb on + strand, within H281DRAFT_02312 at 462.934 kb on + strand, within H281DRAFT_02312 at 462.934 kb on + strand, within H281DRAFT_02312 at 462.935 kb on - strand, within H281DRAFT_02312 at 462.935 kb on - strand, within H281DRAFT_02312 at 462.935 kb on - strand, within H281DRAFT_02312 at 463.055 kb on - strand, within H281DRAFT_02312 at 463.352 kb on + strand, within H281DRAFT_02312 at 463.352 kb on + strand, within H281DRAFT_02312 at 463.352 kb on + strand, within H281DRAFT_02312 at 463.353 kb on - strand, within H281DRAFT_02312 at 463.353 kb on - strand, within H281DRAFT_02312 at 463.353 kb on - strand at 463.406 kb on - strand, within H281DRAFT_02312 at 463.406 kb on - strand, within H281DRAFT_02312 at 463.406 kb on - strand, within H281DRAFT_02312 at 463.422 kb on + strand, within H281DRAFT_02312 at 463.422 kb on + strand, within H281DRAFT_02312 at 463.422 kb on + strand, within H281DRAFT_02312 at 463.422 kb on + strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.453 kb on - strand, within H281DRAFT_02312 at 463.453 kb on - strand, within H281DRAFT_02312 at 463.488 kb on + strand, within H281DRAFT_02312 at 463.489 kb on - strand, within H281DRAFT_02312 at 463.489 kb on - strand, within H281DRAFT_02312 at 463.489 kb on - strand, within H281DRAFT_02312
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 460,177 + +0.8 460,177 + +1.6 460,177 + +0.6 460,177 + -0.1 460,178 - +0.2 460,178 - +0.3 460,193 + -2.2 460,193 + -0.4 460,193 + -0.0 460,194 - -0.2 460,194 - +0.3 460,194 - +1.5 460,195 + +0.3 460,195 + -0.6 460,195 + +0.3 460,195 + +0.6 460,196 - +0.4 460,284 + -0.6 460,284 + -0.1 460,284 + -0.8 460,284 + +1.4 460,284 + +0.4 460,284 + +1.3 460,284 + +1.2 460,285 - +1.0 460,285 - +0.6 460,302 + +1.4 461,119 + +0.2 461,119 + +0.8 461,119 + +1.3 461,119 + +0.0 461,119 + -0.6 461,120 - +0.5 461,120 - +0.3 461,120 - -0.1 461,120 - +0.5 461,120 - +0.3 461,120 - -2.9 461,120 - +0.4 461,140 + -0.3 461,140 + +1.1 461,140 + -0.4 461,140 + +0.2 461,141 - +0.1 461,167 + +0.1 461,295 + H281DRAFT_02311 0.13 +0.2 461,295 + H281DRAFT_02311 0.13 +0.5 461,295 + H281DRAFT_02311 0.13 +0.8 461,296 - H281DRAFT_02311 0.13 +0.3 461,296 - H281DRAFT_02311 0.13 +0.4 461,296 - H281DRAFT_02311 0.13 +0.3 461,298 + H281DRAFT_02311 0.13 +0.5 461,363 + H281DRAFT_02311 0.18 +0.9 461,363 + H281DRAFT_02311 0.18 +0.1 461,363 + H281DRAFT_02311 0.18 +0.6 461,364 - H281DRAFT_02311 0.18 +0.1 461,364 - H281DRAFT_02311 0.18 -0.1 461,364 - H281DRAFT_02311 0.18 -0.0 461,470 + H281DRAFT_02311 0.26 +0.6 461,471 - H281DRAFT_02311 0.26 +0.3 461,493 - H281DRAFT_02311 0.27 +0.7 461,657 + H281DRAFT_02311 0.39 +0.4 461,657 + H281DRAFT_02311 0.39 +0.7 461,657 + H281DRAFT_02311 0.39 +0.3 461,689 + H281DRAFT_02311 0.41 +0.2 461,689 + H281DRAFT_02311 0.41 +0.7 461,689 + H281DRAFT_02311 0.41 -0.2 461,689 + H281DRAFT_02311 0.41 +0.1 461,689 + H281DRAFT_02311 0.41 +0.1 461,689 + H281DRAFT_02311 0.41 -0.1 461,690 - H281DRAFT_02311 0.41 +0.1 461,690 - H281DRAFT_02311 0.41 +0.3 461,690 - H281DRAFT_02311 0.41 -0.1 461,728 - +2.4 461,728 - H281DRAFT_02311 0.44 +0.4 461,728 - H281DRAFT_02311 0.44 +0.4 461,808 + H281DRAFT_02311 0.49 -0.1 461,808 + H281DRAFT_02311 0.49 +0.4 461,808 + H281DRAFT_02311 0.49 +0.8 461,809 - H281DRAFT_02311 0.50 -0.7 461,812 - H281DRAFT_02311 0.50 +0.5 461,837 + H281DRAFT_02311 0.52 +0.4 461,837 + H281DRAFT_02311 0.52 +0.3 461,837 + H281DRAFT_02311 0.52 +0.7 461,838 - H281DRAFT_02311 0.52 +0.2 461,838 - H281DRAFT_02311 0.52 +0.7 461,838 - H281DRAFT_02311 0.52 +0.3 461,838 - H281DRAFT_02311 0.52 +0.6 461,844 + H281DRAFT_02311 0.52 +0.7 461,844 + H281DRAFT_02311 0.52 -0.3 461,845 - H281DRAFT_02311 0.52 +0.1 461,845 - H281DRAFT_02311 0.52 -0.0 461,845 - H281DRAFT_02311 0.52 +0.6 461,852 + H281DRAFT_02311 0.53 +0.4 461,852 + H281DRAFT_02311 0.53 +0.4 461,852 + H281DRAFT_02311 0.53 +1.1 462,037 + H281DRAFT_02311 0.66 -0.8 462,037 + H281DRAFT_02311 0.66 +0.1 462,038 - H281DRAFT_02311 0.66 +0.5 462,038 - H281DRAFT_02311 0.66 +0.4 462,061 + H281DRAFT_02311 0.67 +0.8 462,061 + H281DRAFT_02311 0.67 +1.4 462,062 - +1.3 462,062 - H281DRAFT_02311 0.67 +0.3 462,062 - H281DRAFT_02311 0.67 +0.4 462,083 + H281DRAFT_02311 0.69 +0.9 462,083 + H281DRAFT_02311 0.69 +0.3 462,084 - H281DRAFT_02311 0.69 +0.4 462,186 - H281DRAFT_02311 0.76 +0.4 462,193 - H281DRAFT_02311 0.77 +0.4 462,214 + H281DRAFT_02311 0.78 +0.6 462,214 + H281DRAFT_02311 0.78 +0.2 462,214 + H281DRAFT_02311 0.78 -0.1 462,215 - H281DRAFT_02311 0.78 +0.2 462,215 - H281DRAFT_02311 0.78 +1.4 462,215 - H281DRAFT_02311 0.78 +0.1 462,246 + H281DRAFT_02311 0.80 -0.3 462,247 - H281DRAFT_02311 0.81 +0.1 462,286 + H281DRAFT_02311 0.83 +0.8 462,287 - H281DRAFT_02311 0.83 +0.0 462,287 - H281DRAFT_02311 0.83 +0.2 462,343 + H281DRAFT_02311 0.87 -0.0 462,343 + H281DRAFT_02311 0.87 +0.5 462,343 + H281DRAFT_02311 0.87 +0.6 462,344 - H281DRAFT_02311 0.87 -0.6 462,368 + H281DRAFT_02311 0.89 +0.5 462,368 + H281DRAFT_02311 0.89 +0.1 462,373 + H281DRAFT_02311 0.89 +1.0 462,373 + H281DRAFT_02311 0.89 +0.3 462,373 + H281DRAFT_02311 0.89 +0.0 462,373 + H281DRAFT_02311 0.89 +0.5 462,373 + H281DRAFT_02311 0.89 -1.1 462,373 + H281DRAFT_02311 0.89 +0.4 462,374 - H281DRAFT_02311 0.90 +0.0 462,374 - H281DRAFT_02311 0.90 +0.2 462,374 - H281DRAFT_02311 0.90 +0.1 462,374 - H281DRAFT_02311 0.90 +0.6 462,374 - H281DRAFT_02311 0.90 -0.3 462,374 - H281DRAFT_02311 0.90 +0.5 462,374 - H281DRAFT_02311 0.90 +0.4 462,374 - H281DRAFT_02311 0.90 +0.2 462,374 - +1.7 462,374 - H281DRAFT_02311 0.90 +0.9 462,374 - H281DRAFT_02311 0.90 +0.5 462,374 - H281DRAFT_02311 0.90 +0.6 462,374 - H281DRAFT_02311 0.90 +0.4 462,494 + +0.3 462,495 - +0.1 462,495 - -0.0 462,495 - +0.3 462,495 - -0.2 462,525 + +0.7 462,616 + +0.9 462,616 + +0.3 462,616 + +0.2 462,616 + -0.8 462,617 - +0.0 462,685 + -0.3 462,685 + +0.5 462,685 + -0.2 462,687 + +1.3 462,687 + -0.1 462,688 - +0.9 462,688 - +0.7 462,688 - -0.0 462,726 + +0.2 462,726 + +0.2 462,726 + +0.2 462,727 - -1.1 462,727 - -0.3 462,727 - +0.5 462,727 - +0.3 462,727 - -0.2 462,727 - -0.3 462,770 - -0.2 462,830 - H281DRAFT_02312 0.11 -0.4 462,830 - H281DRAFT_02312 0.11 +0.2 462,831 + H281DRAFT_02312 0.11 +0.3 462,831 + H281DRAFT_02312 0.11 +0.4 462,831 + H281DRAFT_02312 0.11 +0.3 462,831 + H281DRAFT_02312 0.11 +0.4 462,831 + H281DRAFT_02312 0.11 +1.1 462,832 - H281DRAFT_02312 0.11 -0.2 462,832 - H281DRAFT_02312 0.11 +0.8 462,832 - H281DRAFT_02312 0.11 +0.4 462,832 - H281DRAFT_02312 0.11 +0.1 462,832 - H281DRAFT_02312 0.11 +0.2 462,832 - H281DRAFT_02312 0.11 -0.1 462,832 - H281DRAFT_02312 0.11 -0.5 462,832 - H281DRAFT_02312 0.11 +0.7 462,832 - H281DRAFT_02312 0.11 -0.0 462,832 - H281DRAFT_02312 0.11 +0.4 462,847 + H281DRAFT_02312 0.12 -0.2 462,847 + H281DRAFT_02312 0.12 +0.1 462,847 + H281DRAFT_02312 0.12 +0.4 462,848 - H281DRAFT_02312 0.12 -0.1 462,899 + H281DRAFT_02312 0.14 -0.3 462,900 - H281DRAFT_02312 0.14 +0.3 462,900 - H281DRAFT_02312 0.14 +0.3 462,900 - H281DRAFT_02312 0.14 +0.1 462,934 + H281DRAFT_02312 0.15 +0.3 462,934 + H281DRAFT_02312 0.15 +0.3 462,934 + H281DRAFT_02312 0.15 -2.4 462,935 - H281DRAFT_02312 0.15 -0.0 462,935 - H281DRAFT_02312 0.15 +0.8 462,935 - H281DRAFT_02312 0.15 +1.0 463,055 - H281DRAFT_02312 0.20 -0.7 463,352 + H281DRAFT_02312 0.31 +0.4 463,352 + H281DRAFT_02312 0.31 +0.4 463,352 + H281DRAFT_02312 0.31 +0.6 463,353 - H281DRAFT_02312 0.31 +0.4 463,353 - H281DRAFT_02312 0.31 +0.7 463,353 - -1.4 463,406 - H281DRAFT_02312 0.33 +0.5 463,406 - H281DRAFT_02312 0.33 +0.5 463,406 - H281DRAFT_02312 0.33 -0.3 463,422 + H281DRAFT_02312 0.34 +0.1 463,422 + H281DRAFT_02312 0.34 +0.1 463,422 + H281DRAFT_02312 0.34 +0.6 463,422 + H281DRAFT_02312 0.34 +0.0 463,423 - H281DRAFT_02312 0.34 -0.3 463,423 - H281DRAFT_02312 0.34 +0.3 463,423 - H281DRAFT_02312 0.34 +0.7 463,423 - H281DRAFT_02312 0.34 +0.1 463,423 - H281DRAFT_02312 0.34 -0.4 463,423 - H281DRAFT_02312 0.34 +1.0 463,453 - H281DRAFT_02312 0.35 +0.0 463,453 - H281DRAFT_02312 0.35 -0.0 463,488 + H281DRAFT_02312 0.36 +0.3 463,489 - H281DRAFT_02312 0.36 +0.0 463,489 - H281DRAFT_02312 0.36 +0.4 463,489 - H281DRAFT_02312 0.36 -0.0
Or see this region's nucleotide sequence