Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01868

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01867 and H281DRAFT_01868 are separated by 67 nucleotidesH281DRAFT_01868 and H281DRAFT_01869 are separated by 386 nucleotides H281DRAFT_01867: H281DRAFT_01867 - NADPH2:quinone reductase, at 779,772 to 780,752 _01867 H281DRAFT_01868: H281DRAFT_01868 - Predicted arabinose efflux permease, MFS family, at 780,820 to 782,142 _01868 H281DRAFT_01869: H281DRAFT_01869 - AraC-type DNA-binding protein, at 782,529 to 783,530 _01869 Position (kb) 780 781 782 783Strain fitness (log2 ratio) -1 0 1 2at 779.877 kb on - strand, within H281DRAFT_01867at 779.901 kb on + strand, within H281DRAFT_01867at 779.945 kb on - strand, within H281DRAFT_01867at 780.180 kb on - strand, within H281DRAFT_01867at 780.462 kb on - strand, within H281DRAFT_01867at 780.700 kb on + strandat 780.746 kb on + strandat 780.746 kb on + strandat 781.048 kb on - strand, within H281DRAFT_01868at 781.321 kb on - strand, within H281DRAFT_01868at 781.717 kb on + strand, within H281DRAFT_01868at 781.825 kb on + strand, within H281DRAFT_01868at 782.028 kb on - strandat 782.125 kb on + strandat 782.182 kb on - strandat 782.483 kb on + strandat 782.484 kb on - strandat 782.484 kb on - strandat 782.627 kb on - strandat 782.832 kb on + strand, within H281DRAFT_01869at 783.133 kb on - strand, within H281DRAFT_01869

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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779,877 - H281DRAFT_01867 0.11 +1.3
779,901 + H281DRAFT_01867 0.13 +0.3
779,945 - H281DRAFT_01867 0.18 +0.1
780,180 - H281DRAFT_01867 0.42 +1.0
780,462 - H281DRAFT_01867 0.70 +1.3
780,700 + -0.3
780,746 + -1.1
780,746 + +1.8
781,048 - H281DRAFT_01868 0.17 -0.6
781,321 - H281DRAFT_01868 0.38 -0.3
781,717 + H281DRAFT_01868 0.68 -0.5
781,825 + H281DRAFT_01868 0.76 +0.3
782,028 - -0.5
782,125 + -0.7
782,182 - +1.1
782,483 + -0.0
782,484 - +1.9
782,484 - +0.3
782,627 - +0.2
782,832 + H281DRAFT_01869 0.30 +0.1
783,133 - H281DRAFT_01869 0.60 -0.1

Or see this region's nucleotide sequence