Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01626 and H281DRAFT_01627 overlap by 1 nucleotides H281DRAFT_01627 and H281DRAFT_01628 overlap by 4 nucleotides H281DRAFT_01628 and H281DRAFT_01629 are separated by 75 nucleotides
H281DRAFT_01626: H281DRAFT_01626 - putative spermidine/putrescine transport system permease protein, at 505,254 to 506,180
_01626
H281DRAFT_01627: H281DRAFT_01627 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 506,180 to 507,067
_01627
H281DRAFT_01628: H281DRAFT_01628 - putative spermidine/putrescine transport system ATP-binding protein, at 507,064 to 508,143
_01628
H281DRAFT_01629: H281DRAFT_01629 - putative spermidine/putrescine transport system substrate-binding protein, at 508,219 to 509,388
_01629
Position (kb) 507
508
509 Strain fitness (log2 ratio) -1
0
1 at 506.091 kb on + strand at 506.092 kb on - strand at 506.232 kb on - strand at 506.246 kb on + strand at 506.247 kb on - strand at 506.252 kb on + strand at 506.305 kb on - strand, within H281DRAFT_01627 at 506.458 kb on - strand, within H281DRAFT_01627 at 506.458 kb on - strand, within H281DRAFT_01627 at 506.539 kb on - strand, within H281DRAFT_01627 at 506.608 kb on + strand, within H281DRAFT_01627 at 506.609 kb on - strand, within H281DRAFT_01627 at 506.609 kb on - strand at 506.609 kb on - strand, within H281DRAFT_01627 at 506.609 kb on - strand, within H281DRAFT_01627 at 506.686 kb on - strand, within H281DRAFT_01627 at 506.686 kb on - strand, within H281DRAFT_01627 at 506.686 kb on - strand, within H281DRAFT_01627 at 506.686 kb on - strand, within H281DRAFT_01627 at 506.686 kb on - strand, within H281DRAFT_01627 at 506.896 kb on - strand, within H281DRAFT_01627 at 506.961 kb on + strand, within H281DRAFT_01627 at 507.120 kb on + strand at 507.452 kb on + strand, within H281DRAFT_01628 at 507.453 kb on - strand, within H281DRAFT_01628 at 507.453 kb on - strand, within H281DRAFT_01628 at 507.866 kb on + strand, within H281DRAFT_01628 at 507.866 kb on + strand, within H281DRAFT_01628 at 508.221 kb on - strand at 508.421 kb on + strand, within H281DRAFT_01629 at 508.481 kb on + strand, within H281DRAFT_01629 at 508.529 kb on + strand, within H281DRAFT_01629 at 508.529 kb on + strand, within H281DRAFT_01629 at 508.530 kb on - strand, within H281DRAFT_01629 at 508.841 kb on + strand, within H281DRAFT_01629 at 508.842 kb on - strand, within H281DRAFT_01629 at 508.950 kb on + strand, within H281DRAFT_01629 at 508.952 kb on + strand, within H281DRAFT_01629 at 508.953 kb on - strand, within H281DRAFT_01629 at 508.970 kb on + strand, within H281DRAFT_01629 at 509.013 kb on - strand, within H281DRAFT_01629 at 509.013 kb on - strand, within H281DRAFT_01629 at 509.114 kb on - strand, within H281DRAFT_01629 at 509.123 kb on - strand, within H281DRAFT_01629 at 509.123 kb on - strand, within H281DRAFT_01629
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 506,091 + +0.2 506,092 - -1.6 506,232 - +0.0 506,246 + +0.6 506,247 - +0.2 506,252 + -0.2 506,305 - H281DRAFT_01627 0.14 +0.9 506,458 - H281DRAFT_01627 0.31 -0.1 506,458 - H281DRAFT_01627 0.31 +0.0 506,539 - H281DRAFT_01627 0.40 -0.0 506,608 + H281DRAFT_01627 0.48 +0.2 506,609 - H281DRAFT_01627 0.48 -0.7 506,609 - +1.3 506,609 - H281DRAFT_01627 0.48 -1.6 506,609 - H281DRAFT_01627 0.48 +0.8 506,686 - H281DRAFT_01627 0.57 +0.5 506,686 - H281DRAFT_01627 0.57 +0.3 506,686 - H281DRAFT_01627 0.57 -0.8 506,686 - H281DRAFT_01627 0.57 +0.2 506,686 - H281DRAFT_01627 0.57 +0.7 506,896 - H281DRAFT_01627 0.81 -0.7 506,961 + H281DRAFT_01627 0.88 -0.1 507,120 + +0.3 507,452 + H281DRAFT_01628 0.36 -0.0 507,453 - H281DRAFT_01628 0.36 +0.3 507,453 - H281DRAFT_01628 0.36 +0.5 507,866 + H281DRAFT_01628 0.74 +0.9 507,866 + H281DRAFT_01628 0.74 +1.5 508,221 - -0.4 508,421 + H281DRAFT_01629 0.17 -0.0 508,481 + H281DRAFT_01629 0.22 +0.3 508,529 + H281DRAFT_01629 0.26 +0.8 508,529 + H281DRAFT_01629 0.26 +1.2 508,530 - H281DRAFT_01629 0.27 +0.7 508,841 + H281DRAFT_01629 0.53 -0.0 508,842 - H281DRAFT_01629 0.53 +1.7 508,950 + H281DRAFT_01629 0.62 +0.2 508,952 + H281DRAFT_01629 0.63 +1.7 508,953 - H281DRAFT_01629 0.63 +1.6 508,970 + H281DRAFT_01629 0.64 +0.1 509,013 - H281DRAFT_01629 0.68 +0.0 509,013 - H281DRAFT_01629 0.68 -0.8 509,114 - H281DRAFT_01629 0.76 -0.5 509,123 - H281DRAFT_01629 0.77 +0.3 509,123 - H281DRAFT_01629 0.77 +0.9
Or see this region's nucleotide sequence