Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01510

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01509 and H281DRAFT_01510 are separated by 13 nucleotidesH281DRAFT_01510 and H281DRAFT_01511 are separated by 86 nucleotides H281DRAFT_01509: H281DRAFT_01509 - Uncharacterized conserved protein YgbK, DUF1537 family, at 379,197 to 380,507 _01509 H281DRAFT_01510: H281DRAFT_01510 - 3-hydroxyisobutyrate dehydrogenase, at 380,521 to 381,411 _01510 H281DRAFT_01511: H281DRAFT_01511 - transcriptional regulator, GntR family, at 381,498 to 382,202 _01511 Position (kb) 380 381 382Strain fitness (log2 ratio) -2 -1 0 1at 379.535 kb on - strand, within H281DRAFT_01509at 380.243 kb on - strand, within H281DRAFT_01509at 380.737 kb on + strand, within H281DRAFT_01510at 380.738 kb on - strand, within H281DRAFT_01510at 380.738 kb on - strand, within H281DRAFT_01510at 380.738 kb on - strand, within H281DRAFT_01510at 380.798 kb on + strand, within H281DRAFT_01510at 380.799 kb on - strand, within H281DRAFT_01510at 381.422 kb on + strandat 381.688 kb on + strand, within H281DRAFT_01511at 381.688 kb on + strand, within H281DRAFT_01511at 381.688 kb on + strand, within H281DRAFT_01511at 381.689 kb on - strand, within H281DRAFT_01511at 382.146 kb on - strandat 382.319 kb on + strandat 382.319 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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379,535 - H281DRAFT_01509 0.26 +1.1
380,243 - H281DRAFT_01509 0.80 +0.2
380,737 + H281DRAFT_01510 0.24 -0.3
380,738 - H281DRAFT_01510 0.24 +0.2
380,738 - H281DRAFT_01510 0.24 -0.6
380,738 - H281DRAFT_01510 0.24 +0.9
380,798 + H281DRAFT_01510 0.31 +0.1
380,799 - H281DRAFT_01510 0.31 -0.1
381,422 + -2.0
381,688 + H281DRAFT_01511 0.27 -0.7
381,688 + H281DRAFT_01511 0.27 -0.2
381,688 + H281DRAFT_01511 0.27 +1.7
381,689 - H281DRAFT_01511 0.27 +0.3
382,146 - +0.7
382,319 + -0.7
382,319 + +0.5

Or see this region's nucleotide sequence