Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01417

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01416 and H281DRAFT_01417 are separated by 311 nucleotidesH281DRAFT_01417 and H281DRAFT_01418 are separated by 106 nucleotides H281DRAFT_01416: H281DRAFT_01416 - NADH dehydrogenase, at 268,257 to 269,486 _01416 H281DRAFT_01417: H281DRAFT_01417 - anti-sigma-28 factor, FlgM family, at 269,798 to 270,109 _01417 H281DRAFT_01418: H281DRAFT_01418 - Signal transduction histidine kinase, at 270,216 to 274,808 _01418 Position (kb) 269 270 271Strain fitness (log2 ratio) -1 0 1 2at 269.007 kb on - strand, within H281DRAFT_01416at 269.289 kb on - strand, within H281DRAFT_01416at 269.627 kb on + strandat 269.628 kb on - strandat 269.628 kb on - strandat 269.926 kb on + strand, within H281DRAFT_01417at 269.941 kb on + strand, within H281DRAFT_01417at 270.140 kb on + strandat 270.395 kb on + strandat 270.396 kb on - strandat 270.701 kb on - strand, within H281DRAFT_01418at 270.895 kb on - strand, within H281DRAFT_01418at 271.007 kb on + strand, within H281DRAFT_01418at 271.007 kb on + strand, within H281DRAFT_01418at 271.007 kb on + strand, within H281DRAFT_01418at 271.008 kb on - strand, within H281DRAFT_01418

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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269,007 - H281DRAFT_01416 0.61 -0.2
269,289 - H281DRAFT_01416 0.84 -0.6
269,627 + +0.2
269,628 - +0.2
269,628 - +0.4
269,926 + H281DRAFT_01417 0.41 +1.1
269,941 + H281DRAFT_01417 0.46 +0.1
270,140 + +0.4
270,395 + -0.3
270,396 - +0.8
270,701 - H281DRAFT_01418 0.11 +1.3
270,895 - H281DRAFT_01418 0.15 +2.2
271,007 + H281DRAFT_01418 0.17 +0.4
271,007 + H281DRAFT_01418 0.17 +0.5
271,007 + H281DRAFT_01418 0.17 +0.0
271,008 - H281DRAFT_01418 0.17 -0.1

Or see this region's nucleotide sequence