Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00705 and H281DRAFT_00706 are separated by 192 nucleotides H281DRAFT_00706 and H281DRAFT_00707 are separated by 51 nucleotides H281DRAFT_00707 and H281DRAFT_00708 are separated by 10 nucleotides
H281DRAFT_00705: H281DRAFT_00705 - fatty-acyl-CoA synthase, at 790,641 to 792,560
_00705
H281DRAFT_00706: H281DRAFT_00706 - outer membrane protein, at 792,753 to 793,490
_00706
H281DRAFT_00707: H281DRAFT_00707 - trimethylamine-N-oxide reductase (cytochrome c), at 793,542 to 796,520
_00707
H281DRAFT_00708: H281DRAFT_00708 - Fe-S-cluster-containing dehydrogenase component, at 796,531 to 797,394
_00708
Position (kb) 793
794
795
796
797 Strain fitness (log2 ratio) -2
-1
0
1
2 at 793.283 kb on + strand, within H281DRAFT_00706 at 793.751 kb on - strand at 793.996 kb on + strand, within H281DRAFT_00707 at 794.235 kb on + strand, within H281DRAFT_00707 at 794.449 kb on - strand, within H281DRAFT_00707 at 794.771 kb on - strand, within H281DRAFT_00707 at 794.772 kb on + strand, within H281DRAFT_00707 at 794.772 kb on + strand, within H281DRAFT_00707 at 794.773 kb on - strand, within H281DRAFT_00707 at 794.773 kb on - strand, within H281DRAFT_00707 at 794.784 kb on + strand, within H281DRAFT_00707 at 794.785 kb on - strand, within H281DRAFT_00707 at 795.111 kb on + strand, within H281DRAFT_00707 at 795.112 kb on - strand, within H281DRAFT_00707 at 795.343 kb on - strand, within H281DRAFT_00707 at 796.023 kb on + strand, within H281DRAFT_00707 at 796.024 kb on - strand, within H281DRAFT_00707 at 796.024 kb on - strand, within H281DRAFT_00707 at 796.025 kb on + strand, within H281DRAFT_00707 at 796.103 kb on + strand, within H281DRAFT_00707 at 796.104 kb on - strand, within H281DRAFT_00707 at 796.330 kb on - strand at 796.400 kb on + strand at 796.401 kb on - strand at 796.720 kb on + strand, within H281DRAFT_00708 at 796.721 kb on - strand, within H281DRAFT_00708 at 796.845 kb on + strand, within H281DRAFT_00708 at 796.864 kb on + strand, within H281DRAFT_00708 at 796.865 kb on - strand, within H281DRAFT_00708 at 797.188 kb on + strand, within H281DRAFT_00708 at 797.188 kb on + strand, within H281DRAFT_00708 at 797.288 kb on + strand, within H281DRAFT_00708 at 797.289 kb on - strand, within H281DRAFT_00708 at 797.517 kb on + strand at 797.518 kb on - strand at 797.518 kb on - strand at 797.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 793,283 + H281DRAFT_00706 0.72 +0.9 793,751 - +0.9 793,996 + H281DRAFT_00707 0.15 +0.3 794,235 + H281DRAFT_00707 0.23 +0.3 794,449 - H281DRAFT_00707 0.30 +0.6 794,771 - H281DRAFT_00707 0.41 +0.6 794,772 + H281DRAFT_00707 0.41 -0.1 794,772 + H281DRAFT_00707 0.41 +2.7 794,773 - H281DRAFT_00707 0.41 +0.1 794,773 - H281DRAFT_00707 0.41 -0.2 794,784 + H281DRAFT_00707 0.42 -0.1 794,785 - H281DRAFT_00707 0.42 +0.2 795,111 + H281DRAFT_00707 0.53 +0.1 795,112 - H281DRAFT_00707 0.53 +0.5 795,343 - H281DRAFT_00707 0.60 -0.5 796,023 + H281DRAFT_00707 0.83 -0.1 796,024 - H281DRAFT_00707 0.83 +1.4 796,024 - H281DRAFT_00707 0.83 -0.5 796,025 + H281DRAFT_00707 0.83 +0.4 796,103 + H281DRAFT_00707 0.86 +0.8 796,104 - H281DRAFT_00707 0.86 +0.0 796,330 - -0.8 796,400 + +0.1 796,401 - +0.4 796,720 + H281DRAFT_00708 0.22 +0.5 796,721 - H281DRAFT_00708 0.22 +0.7 796,845 + H281DRAFT_00708 0.36 +0.2 796,864 + H281DRAFT_00708 0.39 +0.0 796,865 - H281DRAFT_00708 0.39 +0.2 797,188 + H281DRAFT_00708 0.76 +0.3 797,188 + H281DRAFT_00708 0.76 +0.7 797,288 + H281DRAFT_00708 0.88 +0.7 797,289 - H281DRAFT_00708 0.88 +0.5 797,517 + -0.4 797,518 - -2.4 797,518 - +0.8 797,518 - -0.2
Or see this region's nucleotide sequence