Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00533 and H281DRAFT_00534 are separated by 695 nucleotides H281DRAFT_00534 and H281DRAFT_00535 are separated by 32 nucleotides H281DRAFT_00535 and H281DRAFT_00536 overlap by 21 nucleotides
H281DRAFT_00533: H281DRAFT_00533 - ATP-dependent DNA helicase DinG, at 597,647 to 599,911
_00533
H281DRAFT_00534: H281DRAFT_00534 - 50S ribosomal protein L16 3-hydroxylase, at 600,607 to 601,857
_00534
H281DRAFT_00535: H281DRAFT_00535 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD, at 601,890 to 602,435
_00535
H281DRAFT_00536: H281DRAFT_00536 - hypothetical protein, at 602,415 to 603,830
_00536
Position (kb) 600
601
602 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 599.720 kb on - strand at 599.804 kb on - strand at 599.804 kb on - strand at 599.974 kb on + strand at 599.982 kb on + strand at 600.512 kb on - strand at 600.552 kb on - strand at 600.583 kb on - strand at 600.583 kb on - strand at 600.583 kb on - strand at 600.583 kb on - strand at 600.589 kb on + strand at 600.590 kb on - strand at 600.590 kb on - strand at 600.590 kb on - strand at 600.592 kb on - strand at 600.644 kb on + strand at 600.645 kb on - strand at 600.656 kb on - strand at 600.656 kb on - strand at 600.692 kb on - strand at 600.711 kb on + strand at 600.807 kb on + strand at 600.808 kb on - strand, within H281DRAFT_00534 at 600.853 kb on - strand, within H281DRAFT_00534 at 600.924 kb on - strand, within H281DRAFT_00534 at 600.924 kb on - strand, within H281DRAFT_00534 at 600.924 kb on - strand, within H281DRAFT_00534 at 600.924 kb on - strand, within H281DRAFT_00534 at 600.927 kb on + strand, within H281DRAFT_00534 at 600.928 kb on - strand, within H281DRAFT_00534 at 600.928 kb on - strand, within H281DRAFT_00534 at 600.928 kb on - strand, within H281DRAFT_00534 at 601.101 kb on - strand, within H281DRAFT_00534 at 601.208 kb on + strand, within H281DRAFT_00534 at 601.208 kb on + strand, within H281DRAFT_00534 at 601.208 kb on + strand, within H281DRAFT_00534 at 601.209 kb on - strand, within H281DRAFT_00534 at 601.209 kb on - strand, within H281DRAFT_00534 at 601.209 kb on - strand, within H281DRAFT_00534 at 601.359 kb on - strand, within H281DRAFT_00534 at 601.572 kb on + strand, within H281DRAFT_00534 at 601.573 kb on - strand, within H281DRAFT_00534 at 601.704 kb on - strand, within H281DRAFT_00534 at 601.860 kb on + strand at 601.860 kb on + strand at 601.860 kb on + strand at 601.861 kb on - strand at 601.863 kb on - strand at 601.863 kb on - strand at 601.926 kb on + strand at 601.927 kb on - strand at 601.984 kb on - strand, within H281DRAFT_00535 at 601.998 kb on + strand, within H281DRAFT_00535 at 602.215 kb on - strand, within H281DRAFT_00535 at 602.805 kb on + strand at 602.806 kb on - strand, within H281DRAFT_00536
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 599,720 - -0.3 599,804 - +0.0 599,804 - -0.2 599,974 + -0.8 599,982 + +0.5 600,512 - +1.7 600,552 - -1.3 600,583 - -0.1 600,583 - +0.1 600,583 - +0.4 600,583 - +1.2 600,589 + +0.8 600,590 - +0.5 600,590 - -0.4 600,590 - +0.6 600,592 - +1.2 600,644 + +1.3 600,645 - -0.9 600,656 - -0.6 600,656 - -1.0 600,692 - +0.6 600,711 + -0.8 600,807 + -1.2 600,808 - H281DRAFT_00534 0.16 -0.3 600,853 - H281DRAFT_00534 0.20 +1.2 600,924 - H281DRAFT_00534 0.25 +0.1 600,924 - H281DRAFT_00534 0.25 +0.0 600,924 - H281DRAFT_00534 0.25 +1.0 600,924 - H281DRAFT_00534 0.25 +1.4 600,927 + H281DRAFT_00534 0.26 +0.0 600,928 - H281DRAFT_00534 0.26 +0.1 600,928 - H281DRAFT_00534 0.26 -0.1 600,928 - H281DRAFT_00534 0.26 -1.4 601,101 - H281DRAFT_00534 0.39 -0.3 601,208 + H281DRAFT_00534 0.48 +0.5 601,208 + H281DRAFT_00534 0.48 -1.7 601,208 + H281DRAFT_00534 0.48 -2.3 601,209 - H281DRAFT_00534 0.48 -0.4 601,209 - H281DRAFT_00534 0.48 -0.4 601,209 - H281DRAFT_00534 0.48 +0.5 601,359 - H281DRAFT_00534 0.60 -0.4 601,572 + H281DRAFT_00534 0.77 -3.9 601,573 - H281DRAFT_00534 0.77 -0.1 601,704 - H281DRAFT_00534 0.88 -0.0 601,860 + -1.3 601,860 + -0.5 601,860 + -1.0 601,861 - +0.2 601,863 - -0.1 601,863 - -1.0 601,926 + +0.7 601,927 - -0.7 601,984 - H281DRAFT_00535 0.17 +1.0 601,998 + H281DRAFT_00535 0.20 +0.7 602,215 - H281DRAFT_00535 0.60 -0.3 602,805 + -0.1 602,806 - H281DRAFT_00536 0.28 -0.1
Or see this region's nucleotide sequence