Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00246 and H281DRAFT_00247 are separated by 159 nucleotides H281DRAFT_00247 and H281DRAFT_00248 are separated by 222 nucleotides H281DRAFT_00248 and H281DRAFT_00249 are separated by 95 nucleotides H281DRAFT_00249 and H281DRAFT_00250 are separated by 434 nucleotides
H281DRAFT_00246: H281DRAFT_00246 - phospholipid-binding protein, PBP family, at 264,218 to 264,721
_00246
H281DRAFT_00247: H281DRAFT_00247 - T/G mismatch-specific endonuclease, at 264,881 to 265,327
_00247
H281DRAFT_00248: H281DRAFT_00248 - hypothetical protein, at 265,550 to 265,981
_00248
H281DRAFT_00249: H281DRAFT_00249 - hypothetical protein, at 266,077 to 266,346
_00249
H281DRAFT_00250: H281DRAFT_00250 - hypothetical protein, at 266,781 to 267,395
_00250
Position (kb) 265
266 Strain fitness (log2 ratio) -2
-1
0
1 at 264.654 kb on + strand, within H281DRAFT_00246 at 264.655 kb on - strand, within H281DRAFT_00246 at 264.722 kb on + strand at 264.722 kb on + strand at 264.722 kb on + strand at 264.874 kb on + strand at 264.951 kb on - strand, within H281DRAFT_00247 at 265.693 kb on - strand, within H281DRAFT_00248 at 265.813 kb on - strand, within H281DRAFT_00248 at 265.967 kb on - strand at 266.458 kb on - strand at 266.458 kb on - strand at 266.564 kb on + strand at 266.564 kb on + strand at 266.565 kb on - strand at 266.839 kb on + strand at 266.840 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 264,654 + H281DRAFT_00246 0.87 -0.1 264,655 - H281DRAFT_00246 0.87 -0.7 264,722 + +1.1 264,722 + -0.4 264,722 + +0.3 264,874 + +0.5 264,951 - H281DRAFT_00247 0.16 -0.5 265,693 - H281DRAFT_00248 0.33 +0.0 265,813 - H281DRAFT_00248 0.61 +1.2 265,967 - +0.0 266,458 - +0.6 266,458 - +0.2 266,564 + -0.5 266,564 + -1.8 266,565 - +0.1 266,839 + +1.2 266,840 - -0.5
Or see this region's nucleotide sequence