Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00060

Experiment: m.b. Cholin acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_65p00050 and PGA1_65p00060 overlap by 4 nucleotidesPGA1_65p00060 and PGA1_65p00070 are separated by 951 nucleotides PGA1_65p00050: PGA1_65p00050 - hypothetical protein, at 7,427 to 8,269 _65p00050 PGA1_65p00060: PGA1_65p00060 - putative regulatory protein, LuxR family, at 8,266 to 9,465 _65p00060 PGA1_65p00070: PGA1_65p00070 - putative regulatory protein, LuxR family, at 10,417 to 11,217 _65p00070 Position (kb) 8 9 10Strain fitness (log2 ratio) -1 0 1at 7.325 kb on - strandat 7.475 kb on + strandat 7.492 kb on - strandat 7.573 kb on + strand, within PGA1_65p00050at 8.058 kb on - strand, within PGA1_65p00050at 8.060 kb on + strand, within PGA1_65p00050at 8.273 kb on + strandat 8.365 kb on + strandat 8.670 kb on - strand, within PGA1_65p00060at 8.832 kb on + strand, within PGA1_65p00060at 9.052 kb on + strand, within PGA1_65p00060at 9.055 kb on + strand, within PGA1_65p00060at 9.081 kb on + strand, within PGA1_65p00060at 9.239 kb on + strand, within PGA1_65p00060at 9.247 kb on - strand, within PGA1_65p00060at 9.258 kb on + strand, within PGA1_65p00060at 9.276 kb on - strand, within PGA1_65p00060at 9.276 kb on - strand, within PGA1_65p00060at 9.311 kb on - strand, within PGA1_65p00060at 9.347 kb on + strandat 9.375 kb on - strandat 9.449 kb on + strandat 9.459 kb on + strandat 9.546 kb on - strandat 9.867 kb on + strandat 9.928 kb on + strandat 9.985 kb on - strandat 10.013 kb on - strandat 10.062 kb on - strandat 10.119 kb on + strandat 10.121 kb on + strandat 10.299 kb on - strandat 10.345 kb on + strandat 10.461 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM
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7,325 - +0.8
7,475 + -0.6
7,492 - +0.8
7,573 + PGA1_65p00050 0.17 -1.4
8,058 - PGA1_65p00050 0.75 +1.0
8,060 + PGA1_65p00050 0.75 +1.0
8,273 + +0.4
8,365 + +0.7
8,670 - PGA1_65p00060 0.34 +1.5
8,832 + PGA1_65p00060 0.47 +1.2
9,052 + PGA1_65p00060 0.66 +0.2
9,055 + PGA1_65p00060 0.66 +0.0
9,081 + PGA1_65p00060 0.68 +0.4
9,239 + PGA1_65p00060 0.81 +0.4
9,247 - PGA1_65p00060 0.82 -0.9
9,258 + PGA1_65p00060 0.83 +0.7
9,276 - PGA1_65p00060 0.84 +0.9
9,276 - PGA1_65p00060 0.84 -0.6
9,311 - PGA1_65p00060 0.87 -0.1
9,347 + +0.7
9,375 - +0.5
9,449 + -0.0
9,459 + +0.9
9,546 - -0.4
9,867 + -0.6
9,928 + +0.9
9,985 - -0.7
10,013 - +0.2
10,062 - +1.0
10,119 + +1.4
10,121 + +1.3
10,299 - +1.2
10,345 + -0.9
10,461 - +0.5

Or see this region's nucleotide sequence