Experiment: m.b. Cholin acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00030 and PGA1_65p00040 are separated by 162 nucleotides PGA1_65p00040 and PGA1_65p00050 are separated by 211 nucleotides
PGA1_65p00030: PGA1_65p00030 - putative type I secretion system ATPase, at 2,776 to 4,539
_65p00030
PGA1_65p00040: PGA1_65p00040 - RTX toxins and related Ca2+-binding proteins, at 4,702 to 7,215
_65p00040
PGA1_65p00050: PGA1_65p00050 - hypothetical protein, at 7,427 to 8,269
_65p00050
Position (kb) 4
5
6
7
8 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3.928 kb on + strand, within PGA1_65p00030 at 3.937 kb on - strand, within PGA1_65p00030 at 4.047 kb on + strand, within PGA1_65p00030 at 4.129 kb on + strand, within PGA1_65p00030 at 4.318 kb on + strand, within PGA1_65p00030 at 4.402 kb on + strand at 4.542 kb on - strand at 4.556 kb on - strand at 4.607 kb on + strand at 4.657 kb on - strand at 4.936 kb on + strand at 4.969 kb on + strand, within PGA1_65p00040 at 5.028 kb on - strand, within PGA1_65p00040 at 5.028 kb on - strand at 5.134 kb on - strand, within PGA1_65p00040 at 5.289 kb on - strand at 5.317 kb on - strand, within PGA1_65p00040 at 5.428 kb on + strand, within PGA1_65p00040 at 5.497 kb on + strand, within PGA1_65p00040 at 5.542 kb on - strand, within PGA1_65p00040 at 5.552 kb on + strand, within PGA1_65p00040 at 5.562 kb on + strand, within PGA1_65p00040 at 5.667 kb on + strand, within PGA1_65p00040 at 5.764 kb on - strand, within PGA1_65p00040 at 5.827 kb on + strand, within PGA1_65p00040 at 5.827 kb on + strand, within PGA1_65p00040 at 5.827 kb on + strand, within PGA1_65p00040 at 5.834 kb on + strand, within PGA1_65p00040 at 5.835 kb on - strand, within PGA1_65p00040 at 5.876 kb on - strand, within PGA1_65p00040 at 5.970 kb on - strand, within PGA1_65p00040 at 6.162 kb on - strand, within PGA1_65p00040 at 6.172 kb on + strand, within PGA1_65p00040 at 6.330 kb on + strand, within PGA1_65p00040 at 6.446 kb on - strand, within PGA1_65p00040 at 6.603 kb on - strand, within PGA1_65p00040 at 6.776 kb on - strand, within PGA1_65p00040 at 6.987 kb on + strand at 7.018 kb on - strand at 7.018 kb on - strand at 7.018 kb on - strand at 7.054 kb on + strand at 7.062 kb on - strand at 7.325 kb on - strand at 7.475 kb on + strand at 7.492 kb on - strand at 7.573 kb on + strand, within PGA1_65p00050 at 8.058 kb on - strand, within PGA1_65p00050 at 8.060 kb on + strand, within PGA1_65p00050
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM remove 3,928 + PGA1_65p00030 0.65 -0.4 3,937 - PGA1_65p00030 0.66 +1.0 4,047 + PGA1_65p00030 0.72 -1.8 4,129 + PGA1_65p00030 0.77 -1.6 4,318 + PGA1_65p00030 0.87 -1.3 4,402 + -0.1 4,542 - +1.5 4,556 - +1.2 4,607 + +0.6 4,657 - +0.0 4,936 + +1.1 4,969 + PGA1_65p00040 0.11 +0.5 5,028 - PGA1_65p00040 0.13 +0.8 5,028 - +1.9 5,134 - PGA1_65p00040 0.17 +0.2 5,289 - +0.9 5,317 - PGA1_65p00040 0.24 -0.3 5,428 + PGA1_65p00040 0.29 +1.8 5,497 + PGA1_65p00040 0.32 +1.3 5,542 - PGA1_65p00040 0.33 -0.3 5,552 + PGA1_65p00040 0.34 +1.1 5,562 + PGA1_65p00040 0.34 +1.0 5,667 + PGA1_65p00040 0.38 -0.3 5,764 - PGA1_65p00040 0.42 +1.0 5,827 + PGA1_65p00040 0.45 -0.9 5,827 + PGA1_65p00040 0.45 +0.7 5,827 + PGA1_65p00040 0.45 +0.2 5,834 + PGA1_65p00040 0.45 +1.6 5,835 - PGA1_65p00040 0.45 +1.5 5,876 - PGA1_65p00040 0.47 -0.6 5,970 - PGA1_65p00040 0.50 -0.8 6,162 - PGA1_65p00040 0.58 +0.2 6,172 + PGA1_65p00040 0.58 -0.4 6,330 + PGA1_65p00040 0.65 +1.0 6,446 - PGA1_65p00040 0.69 +0.2 6,603 - PGA1_65p00040 0.76 +1.3 6,776 - PGA1_65p00040 0.82 -0.0 6,987 + +0.6 7,018 - +1.2 7,018 - -0.1 7,018 - -0.3 7,054 + +1.1 7,062 - +1.1 7,325 - +0.8 7,475 + -0.6 7,492 - +0.8 7,573 + PGA1_65p00050 0.17 -1.4 8,058 - PGA1_65p00050 0.75 +1.0 8,060 + PGA1_65p00050 0.75 +1.0
Or see this region's nucleotide sequence