Experiment: m.b. Cholin acetate 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00410 and PGA1_262p00420 overlap by 11 nucleotides PGA1_262p00420 and PGA1_262p00430 are separated by 186 nucleotides
PGA1_262p00410: PGA1_262p00410 - ASPIC and UnbV., at 48,880 to 50,436
_262p00410
PGA1_262p00420: PGA1_262p00420 - Transcriptional regulator/sugar kinase, at 50,426 to 51,640
_262p00420
PGA1_262p00430: PGA1_262p00430 - glucose transporter, periplasmic substrate-binding component <small>(from data)</small>, at 51,827 to 52,852
_262p00430
Position (kb) 50
51
52 Strain fitness (log2 ratio) -1
0
1 at 49.626 kb on - strand, within PGA1_262p00410 at 49.720 kb on - strand, within PGA1_262p00410 at 49.805 kb on + strand, within PGA1_262p00410 at 49.905 kb on - strand, within PGA1_262p00410 at 49.909 kb on - strand, within PGA1_262p00410 at 50.043 kb on - strand, within PGA1_262p00410 at 50.149 kb on + strand, within PGA1_262p00410 at 50.361 kb on + strand at 50.378 kb on + strand at 50.423 kb on + strand at 50.424 kb on + strand at 50.556 kb on + strand, within PGA1_262p00420 at 50.642 kb on + strand, within PGA1_262p00420 at 50.959 kb on - strand, within PGA1_262p00420 at 51.165 kb on - strand, within PGA1_262p00420 at 51.203 kb on + strand, within PGA1_262p00420 at 51.211 kb on - strand, within PGA1_262p00420 at 51.224 kb on + strand, within PGA1_262p00420 at 51.387 kb on - strand, within PGA1_262p00420 at 51.387 kb on - strand, within PGA1_262p00420 at 51.409 kb on + strand, within PGA1_262p00420 at 51.442 kb on + strand, within PGA1_262p00420 at 51.553 kb on + strand at 51.676 kb on + strand at 51.706 kb on - strand at 51.764 kb on + strand at 51.776 kb on + strand at 51.783 kb on + strand at 51.784 kb on - strand at 51.989 kb on + strand, within PGA1_262p00430 at 51.997 kb on - strand, within PGA1_262p00430 at 52.107 kb on - strand, within PGA1_262p00430 at 52.270 kb on + strand, within PGA1_262p00430 at 52.375 kb on + strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.383 kb on - strand, within PGA1_262p00430 at 52.426 kb on - strand, within PGA1_262p00430
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM remove 49,626 - PGA1_262p00410 0.48 +1.1 49,720 - PGA1_262p00410 0.54 +0.2 49,805 + PGA1_262p00410 0.59 -0.1 49,905 - PGA1_262p00410 0.66 -1.0 49,909 - PGA1_262p00410 0.66 +1.1 50,043 - PGA1_262p00410 0.75 -0.1 50,149 + PGA1_262p00410 0.82 +0.3 50,361 + -0.4 50,378 + -0.3 50,423 + -0.1 50,424 + +0.3 50,556 + PGA1_262p00420 0.11 +0.7 50,642 + PGA1_262p00420 0.18 +1.3 50,959 - PGA1_262p00420 0.44 +1.2 51,165 - PGA1_262p00420 0.61 -0.0 51,203 + PGA1_262p00420 0.64 -0.6 51,211 - PGA1_262p00420 0.65 +0.7 51,224 + PGA1_262p00420 0.66 -0.3 51,387 - PGA1_262p00420 0.79 +0.2 51,387 - PGA1_262p00420 0.79 +0.3 51,409 + PGA1_262p00420 0.81 -0.1 51,442 + PGA1_262p00420 0.84 -0.4 51,553 + -0.3 51,676 + +0.4 51,706 - -0.4 51,764 + -1.3 51,776 + -0.1 51,783 + +0.4 51,784 - +0.1 51,989 + PGA1_262p00430 0.16 +1.0 51,997 - PGA1_262p00430 0.17 -0.9 52,107 - PGA1_262p00430 0.27 -0.9 52,270 + PGA1_262p00430 0.43 -0.8 52,375 + PGA1_262p00430 0.53 +0.1 52,383 - PGA1_262p00430 0.54 +0.4 52,383 - PGA1_262p00430 0.54 +0.5 52,383 - PGA1_262p00430 0.54 -0.4 52,383 - PGA1_262p00430 0.54 +0.9 52,426 - PGA1_262p00430 0.58 -0.1
Or see this region's nucleotide sequence