Experiment: m.b. Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3527 and HP15_3528 are separated by 19 nucleotides HP15_3528 and HP15_3529 are separated by 49 nucleotides HP15_3529 and HP15_3530 are separated by 24 nucleotides
HP15_3527: HP15_3527 - GGDEF family protein, at 3,714,463 to 3,715,530
_3527
HP15_3528: HP15_3528 - mesoderm specific transcript isoform b isoform-like protein, at 3,715,550 to 3,716,617
_3528
HP15_3529: HP15_3529 - GTP cyclohydrolase 1, at 3,716,667 to 3,717,236
_3529
HP15_3530: HP15_3530 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase, at 3,717,261 to 3,717,635
_3530
Position (kb)
3715
3716
3717 Strain fitness (log2 ratio)
-2
-1
0
1 at 3714.734 kb on - strand, within HP15_3527 at 3714.739 kb on - strand, within HP15_3527 at 3714.753 kb on - strand, within HP15_3527 at 3714.758 kb on - strand, within HP15_3527 at 3714.771 kb on + strand, within HP15_3527 at 3714.771 kb on + strand, within HP15_3527 at 3714.779 kb on - strand, within HP15_3527 at 3714.796 kb on + strand, within HP15_3527 at 3714.864 kb on - strand, within HP15_3527 at 3714.990 kb on - strand, within HP15_3527 at 3715.026 kb on - strand, within HP15_3527 at 3715.118 kb on + strand, within HP15_3527 at 3715.119 kb on + strand, within HP15_3527 at 3715.157 kb on + strand, within HP15_3527 at 3715.201 kb on - strand, within HP15_3527 at 3715.240 kb on - strand, within HP15_3527 at 3715.355 kb on + strand, within HP15_3527 at 3715.388 kb on - strand, within HP15_3527 at 3715.389 kb on - strand, within HP15_3527 at 3715.394 kb on - strand, within HP15_3527 at 3715.503 kb on + strand at 3715.503 kb on + strand at 3715.504 kb on - strand at 3715.506 kb on - strand at 3715.584 kb on - strand at 3715.612 kb on + strand at 3715.656 kb on - strand at 3715.666 kb on + strand, within HP15_3528 at 3715.743 kb on + strand, within HP15_3528 at 3715.751 kb on - strand, within HP15_3528 at 3715.781 kb on + strand, within HP15_3528 at 3715.839 kb on + strand, within HP15_3528 at 3715.931 kb on + strand, within HP15_3528 at 3715.939 kb on - strand, within HP15_3528 at 3716.122 kb on + strand, within HP15_3528 at 3716.140 kb on - strand, within HP15_3528 at 3716.146 kb on + strand, within HP15_3528 at 3716.159 kb on - strand, within HP15_3528 at 3716.162 kb on + strand, within HP15_3528 at 3716.217 kb on - strand, within HP15_3528 at 3716.404 kb on + strand, within HP15_3528 at 3716.404 kb on + strand, within HP15_3528 at 3716.404 kb on + strand, within HP15_3528 at 3716.410 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.459 kb on + strand, within HP15_3528 at 3716.484 kb on - strand, within HP15_3528 at 3716.528 kb on + strand at 3716.534 kb on + strand at 3716.599 kb on + strand at 3716.638 kb on + strand at 3716.748 kb on + strand, within HP15_3529 at 3716.778 kb on + strand, within HP15_3529 at 3716.784 kb on - strand, within HP15_3529 at 3716.961 kb on + strand, within HP15_3529 at 3716.961 kb on + strand, within HP15_3529 at 3716.969 kb on - strand, within HP15_3529 at 3716.969 kb on - strand, within HP15_3529 at 3716.980 kb on - strand, within HP15_3529 at 3717.051 kb on + strand, within HP15_3529 at 3717.099 kb on + strand, within HP15_3529 at 3717.240 kb on + strand at 3717.384 kb on - strand, within HP15_3530 at 3717.386 kb on + strand, within HP15_3530 at 3717.405 kb on + strand, within HP15_3530 at 3717.406 kb on + strand, within HP15_3530 at 3717.432 kb on + strand, within HP15_3530 at 3717.487 kb on + strand, within HP15_3530 at 3717.503 kb on - strand, within HP15_3530 at 3717.505 kb on - strand, within HP15_3530 at 3717.512 kb on - strand, within HP15_3530 at 3717.518 kb on - strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.519 kb on + strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.527 kb on - strand, within HP15_3530 at 3717.563 kb on + strand, within HP15_3530
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.5 mg/ml remove 3,714,734 - HP15_3527 0.25 +0.1 3,714,739 - HP15_3527 0.26 +0.6 3,714,753 - HP15_3527 0.27 -0.8 3,714,758 - HP15_3527 0.28 -0.0 3,714,771 + HP15_3527 0.29 -0.4 3,714,771 + HP15_3527 0.29 +0.3 3,714,779 - HP15_3527 0.30 -0.4 3,714,796 + HP15_3527 0.31 +1.6 3,714,864 - HP15_3527 0.38 -0.0 3,714,990 - HP15_3527 0.49 -1.1 3,715,026 - HP15_3527 0.53 -1.0 3,715,118 + HP15_3527 0.61 +0.3 3,715,119 + HP15_3527 0.61 -0.2 3,715,157 + HP15_3527 0.65 -1.8 3,715,201 - HP15_3527 0.69 +0.5 3,715,240 - HP15_3527 0.73 -0.5 3,715,355 + HP15_3527 0.84 +0.4 3,715,388 - HP15_3527 0.87 +0.3 3,715,389 - HP15_3527 0.87 -0.0 3,715,394 - HP15_3527 0.87 +0.1 3,715,503 + +0.6 3,715,503 + +0.0 3,715,504 - -0.1 3,715,506 - -0.4 3,715,584 - -0.6 3,715,612 + +0.3 3,715,656 - +0.2 3,715,666 + HP15_3528 0.11 +0.7 3,715,743 + HP15_3528 0.18 +0.2 3,715,751 - HP15_3528 0.19 -0.4 3,715,781 + HP15_3528 0.22 -1.2 3,715,839 + HP15_3528 0.27 -0.3 3,715,931 + HP15_3528 0.36 +1.3 3,715,939 - HP15_3528 0.36 +0.7 3,716,122 + HP15_3528 0.54 -1.5 3,716,140 - HP15_3528 0.55 -0.2 3,716,146 + HP15_3528 0.56 -0.5 3,716,159 - HP15_3528 0.57 -1.9 3,716,162 + HP15_3528 0.57 +0.1 3,716,217 - HP15_3528 0.62 -0.1 3,716,404 + HP15_3528 0.80 -0.3 3,716,404 + HP15_3528 0.80 +0.2 3,716,404 + HP15_3528 0.80 -0.3 3,716,410 - HP15_3528 0.81 +0.3 3,716,412 - HP15_3528 0.81 +0.3 3,716,412 - HP15_3528 0.81 +0.2 3,716,412 - HP15_3528 0.81 -0.1 3,716,412 - HP15_3528 0.81 -0.1 3,716,459 + HP15_3528 0.85 -0.1 3,716,484 - HP15_3528 0.87 +0.4 3,716,528 + +0.6 3,716,534 + +0.4 3,716,599 + -0.0 3,716,638 + -0.3 3,716,748 + HP15_3529 0.14 -0.0 3,716,778 + HP15_3529 0.19 -0.2 3,716,784 - HP15_3529 0.21 -0.3 3,716,961 + HP15_3529 0.52 +0.1 3,716,961 + HP15_3529 0.52 -0.2 3,716,969 - HP15_3529 0.53 -0.3 3,716,969 - HP15_3529 0.53 -0.1 3,716,980 - HP15_3529 0.55 +0.1 3,717,051 + HP15_3529 0.67 -0.3 3,717,099 + HP15_3529 0.76 +0.1 3,717,240 + +1.2 3,717,384 - HP15_3530 0.33 -0.3 3,717,386 + HP15_3530 0.33 +0.2 3,717,405 + HP15_3530 0.38 +0.0 3,717,406 + HP15_3530 0.39 -1.9 3,717,432 + HP15_3530 0.46 +1.1 3,717,487 + HP15_3530 0.60 -0.4 3,717,503 - HP15_3530 0.65 -0.4 3,717,505 - HP15_3530 0.65 +1.7 3,717,512 - HP15_3530 0.67 +0.0 3,717,518 - HP15_3530 0.69 -0.1 3,717,519 + HP15_3530 0.69 +0.6 3,717,519 + HP15_3530 0.69 +0.1 3,717,519 + HP15_3530 0.69 -0.1 3,717,519 + HP15_3530 0.69 -0.4 3,717,519 + HP15_3530 0.69 +0.4 3,717,527 - HP15_3530 0.71 +0.2 3,717,527 - HP15_3530 0.71 +0.1 3,717,527 - HP15_3530 0.71 +1.3 3,717,527 - HP15_3530 0.71 -0.3 3,717,563 + HP15_3530 0.81 +0.3
Or see this region's nucleotide sequence