Experiment: m.b. Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3224 and HP15_3225 are separated by 224 nucleotides HP15_3225 and HP15_3226 overlap by 4 nucleotides HP15_3226 and HP15_3227 are separated by 84 nucleotides
HP15_3224: HP15_3224 - family finger-like protein, at 3,376,332 to 3,377,588
_3224
HP15_3225: HP15_3225 - tRNA-dihydrouridine synthase B, at 3,377,813 to 3,378,811
_3225
HP15_3226: HP15_3226 - fis-like DNA-binding protein, at 3,378,808 to 3,379,125
_3226
HP15_3227: HP15_3227 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 3,379,210 to 3,380,790
_3227
Position (kb)
3377
3378
3379 Strain fitness (log2 ratio)
-1
0
1 at 3376.817 kb on + strand, within HP15_3224 at 3376.825 kb on - strand, within HP15_3224 at 3376.868 kb on + strand, within HP15_3224 at 3376.898 kb on - strand, within HP15_3224 at 3376.939 kb on + strand, within HP15_3224 at 3376.948 kb on + strand, within HP15_3224 at 3377.118 kb on + strand, within HP15_3224 at 3377.126 kb on - strand, within HP15_3224 at 3377.144 kb on - strand, within HP15_3224 at 3377.147 kb on + strand, within HP15_3224 at 3377.203 kb on + strand, within HP15_3224 at 3377.211 kb on - strand, within HP15_3224 at 3377.211 kb on - strand, within HP15_3224 at 3377.211 kb on - strand, within HP15_3224 at 3377.241 kb on - strand, within HP15_3224 at 3377.270 kb on - strand, within HP15_3224 at 3377.456 kb on + strand, within HP15_3224 at 3377.583 kb on + strand at 3377.924 kb on - strand, within HP15_3225 at 3378.001 kb on + strand, within HP15_3225 at 3378.012 kb on + strand, within HP15_3225 at 3378.226 kb on - strand, within HP15_3225 at 3378.405 kb on + strand, within HP15_3225 at 3378.503 kb on + strand, within HP15_3225 at 3378.503 kb on + strand, within HP15_3225 at 3378.503 kb on + strand, within HP15_3225 at 3378.503 kb on + strand, within HP15_3225 at 3378.503 kb on + strand, within HP15_3225 at 3378.503 kb on + strand, within HP15_3225 at 3378.503 kb on + strand, within HP15_3225 at 3378.511 kb on - strand, within HP15_3225 at 3378.640 kb on + strand, within HP15_3225 at 3378.690 kb on + strand, within HP15_3225 at 3378.741 kb on + strand at 3379.118 kb on - strand at 3379.173 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 0.5 mg/ml remove 3,376,817 + HP15_3224 0.39 +0.5 3,376,825 - HP15_3224 0.39 -0.2 3,376,868 + HP15_3224 0.43 -0.0 3,376,898 - HP15_3224 0.45 -0.1 3,376,939 + HP15_3224 0.48 +0.1 3,376,948 + HP15_3224 0.49 +1.5 3,377,118 + HP15_3224 0.63 +0.2 3,377,126 - HP15_3224 0.63 +0.2 3,377,144 - HP15_3224 0.65 -0.0 3,377,147 + HP15_3224 0.65 +0.5 3,377,203 + HP15_3224 0.69 -0.1 3,377,211 - HP15_3224 0.70 +0.2 3,377,211 - HP15_3224 0.70 -0.0 3,377,211 - HP15_3224 0.70 -0.7 3,377,241 - HP15_3224 0.72 -0.7 3,377,270 - HP15_3224 0.75 +0.2 3,377,456 + HP15_3224 0.89 +0.3 3,377,583 + +0.0 3,377,924 - HP15_3225 0.11 +0.6 3,378,001 + HP15_3225 0.19 +0.9 3,378,012 + HP15_3225 0.20 -0.1 3,378,226 - HP15_3225 0.41 +0.9 3,378,405 + HP15_3225 0.59 +0.1 3,378,503 + HP15_3225 0.69 -0.1 3,378,503 + HP15_3225 0.69 -0.1 3,378,503 + HP15_3225 0.69 -0.3 3,378,503 + HP15_3225 0.69 -0.2 3,378,503 + HP15_3225 0.69 -0.1 3,378,503 + HP15_3225 0.69 +0.0 3,378,503 + HP15_3225 0.69 -0.7 3,378,511 - HP15_3225 0.70 +1.1 3,378,640 + HP15_3225 0.83 -1.4 3,378,690 + HP15_3225 0.88 -0.9 3,378,741 + -0.2 3,379,118 - +0.2 3,379,173 + +0.0
Or see this region's nucleotide sequence