Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c21520

Experiment: m.b. Cholin acetate 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c21510 and PGA1_c21520 overlap by 38 nucleotidesPGA1_c21520 and PGA1_c21525 are separated by 202 nucleotidesPGA1_c21525 and PGA1_c21530 are separated by 88 nucleotides PGA1_c21510: PGA1_c21510 - methylmalonyl-CoA mutase BhbA, at 2,228,021 to 2,230,144 _c21510 PGA1_c21520: PGA1_c21520 - hypothetical protein, at 2,230,107 to 2,231,042 _c21520 PGA1_c21525: PGA1_c21525 - hypothetical protein, at 2,231,245 to 2,231,850 _c21525 PGA1_c21530: PGA1_c21530 - hypothetical protein, at 2,231,939 to 2,232,466 _c21530 Position (kb) 2230 2231 2232Strain fitness (log2 ratio) -3 -2 -1 0 1at 2230.171 kb on - strandat 2230.278 kb on - strand, within PGA1_c21520at 2230.280 kb on + strand, within PGA1_c21520at 2230.320 kb on - strand, within PGA1_c21520at 2230.405 kb on + strand, within PGA1_c21520at 2230.526 kb on - strand, within PGA1_c21520at 2230.775 kb on - strand, within PGA1_c21520at 2231.051 kb on - strandat 2231.051 kb on - strandat 2231.056 kb on - strandat 2231.056 kb on - strandat 2231.098 kb on + strandat 2231.098 kb on + strandat 2231.098 kb on + strandat 2231.098 kb on + strandat 2231.106 kb on - strandat 2231.188 kb on + strandat 2231.196 kb on - strandat 2231.766 kb on + strand, within PGA1_c21525

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cholin acetate 15 mM
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2,230,171 - -0.2
2,230,278 - PGA1_c21520 0.18 +0.6
2,230,280 + PGA1_c21520 0.18 +0.5
2,230,320 - PGA1_c21520 0.23 +0.2
2,230,405 + PGA1_c21520 0.32 +0.1
2,230,526 - PGA1_c21520 0.45 +0.2
2,230,775 - PGA1_c21520 0.71 +1.0
2,231,051 - +0.5
2,231,051 - +0.3
2,231,056 - -0.9
2,231,056 - -0.4
2,231,098 + -1.3
2,231,098 + -2.9
2,231,098 + +0.2
2,231,098 + -1.1
2,231,106 - +0.6
2,231,188 + +0.6
2,231,196 - +0.5
2,231,766 + PGA1_c21525 0.86 -0.4

Or see this region's nucleotide sequence