Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3038

Experiment: MoLS4 with Chlorate 6.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3036 and DvMF_3037 are separated by 154 nucleotidesDvMF_3037 and DvMF_3038 are separated by 203 nucleotidesDvMF_3038 and DvMF_3039 are separated by 177 nucleotides DvMF_3036: DvMF_3036 - cytochrome c biogenesis protein transmembrane region (RefSeq), at 3,832,307 to 3,834,502 _3036 DvMF_3037: DvMF_3037 - hypothetical protein (RefSeq), at 3,834,657 to 3,835,175 _3037 DvMF_3038: DvMF_3038 - transcriptional regulator, TetR family (RefSeq), at 3,835,379 to 3,836,008 _3038 DvMF_3039: DvMF_3039 - peptidase M24 (RefSeq), at 3,836,186 to 3,837,445 _3039 Position (kb) 3835 3836 3837Strain fitness (log2 ratio) -3 -2 -1 0 1at 3834.385 kb on + strandat 3834.600 kb on + strandat 3834.655 kb on + strandat 3834.755 kb on - strand, within DvMF_3037at 3834.781 kb on - strand, within DvMF_3037at 3834.781 kb on - strand, within DvMF_3037at 3834.784 kb on + strand, within DvMF_3037at 3834.941 kb on + strand, within DvMF_3037at 3835.253 kb on + strandat 3835.316 kb on + strandat 3836.312 kb on + strand, within DvMF_3039at 3836.522 kb on + strand, within DvMF_3039at 3836.522 kb on + strand, within DvMF_3039at 3836.522 kb on + strand, within DvMF_3039at 3836.642 kb on + strand, within DvMF_3039at 3836.952 kb on + strand, within DvMF_3039at 3837.001 kb on - strand, within DvMF_3039at 3837.001 kb on - strand, within DvMF_3039at 3837.001 kb on - strand, within DvMF_3039

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
remove
3,834,385 + -1.8
3,834,600 + -1.4
3,834,655 + -1.2
3,834,755 - DvMF_3037 0.19 -1.8
3,834,781 - DvMF_3037 0.24 -0.2
3,834,781 - DvMF_3037 0.24 -1.2
3,834,784 + DvMF_3037 0.24 -1.4
3,834,941 + DvMF_3037 0.55 -0.7
3,835,253 + -0.6
3,835,316 + -2.1
3,836,312 + DvMF_3039 0.10 +0.2
3,836,522 + DvMF_3039 0.27 -0.9
3,836,522 + DvMF_3039 0.27 -1.5
3,836,522 + DvMF_3039 0.27 -1.1
3,836,642 + DvMF_3039 0.36 -0.2
3,836,952 + DvMF_3039 0.61 -0.3
3,837,001 - DvMF_3039 0.65 -1.9
3,837,001 - DvMF_3039 0.65 -0.9
3,837,001 - DvMF_3039 0.65 -3.7

Or see this region's nucleotide sequence