Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3028

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3027 and DvMF_3028 are separated by 1 nucleotidesDvMF_3028 and DvMF_3029 are separated by 4 nucleotides DvMF_3027: DvMF_3027 - inner-membrane translocator (RefSeq), at 3,820,929 to 3,822,002 _3027 DvMF_3028: DvMF_3028 - inner-membrane translocator (RefSeq), at 3,822,004 to 3,822,930 _3028 DvMF_3029: DvMF_3029 - ABC transporter related (RefSeq), at 3,822,935 to 3,824,548 _3029 Position (kb) 3822 3823Strain fitness (log2 ratio) -2 -1 0 1at 3821.160 kb on - strand, within DvMF_3027at 3821.339 kb on - strand, within DvMF_3027at 3821.526 kb on - strand, within DvMF_3027at 3821.658 kb on + strand, within DvMF_3027at 3822.070 kb on - strandat 3822.298 kb on - strand, within DvMF_3028at 3822.457 kb on - strand, within DvMF_3028at 3822.836 kb on - strand, within DvMF_3028at 3823.136 kb on - strand, within DvMF_3029at 3823.560 kb on + strand, within DvMF_3029at 3823.578 kb on - strand, within DvMF_3029

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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3,821,160 - DvMF_3027 0.22 -1.9
3,821,339 - DvMF_3027 0.38 -0.9
3,821,526 - DvMF_3027 0.56 -1.1
3,821,658 + DvMF_3027 0.68 -2.5
3,822,070 - -1.5
3,822,298 - DvMF_3028 0.32 -0.6
3,822,457 - DvMF_3028 0.49 -0.5
3,822,836 - DvMF_3028 0.90 -1.0
3,823,136 - DvMF_3029 0.12 +0.4
3,823,560 + DvMF_3029 0.39 -1.6
3,823,578 - DvMF_3029 0.40 +0.3

Or see this region's nucleotide sequence