Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3005

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3003 and DvMF_3004 are separated by 150 nucleotidesDvMF_3004 and DvMF_3005 are separated by 197 nucleotidesDvMF_3005 and DvMF_3006 are separated by 108 nucleotidesDvMF_3006 and thiE are separated by 5 nucleotides DvMF_3003: DvMF_3003 - putative transcriptional regulator, GntR family (RefSeq), at 3,790,053 to 3,791,237 _3003 DvMF_3004: DvMF_3004 - pyridoxamine 5'-phosphate oxidase-related FMN-binding protein (RefSeq), at 3,791,388 to 3,791,849 _3004 DvMF_3005: DvMF_3005 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 3,792,047 to 3,793,507 _3005 DvMF_3006: DvMF_3006 - hydroxyethylthiazole kinase (RefSeq), at 3,793,616 to 3,794,419 _3006 DvMF_3007: thiE - thiamine-phosphate pyrophosphorylase (RefSeq), at 3,794,425 to 3,795,066 thiE Position (kb) 3792 3793 3794Strain fitness (log2 ratio) -2 -1 0 1at 3791.232 kb on + strandat 3791.240 kb on - strandat 3791.375 kb on - strandat 3791.385 kb on + strandat 3791.489 kb on - strand, within DvMF_3004at 3791.587 kb on + strand, within DvMF_3004at 3791.595 kb on - strand, within DvMF_3004at 3791.614 kb on - strand, within DvMF_3004at 3791.642 kb on + strand, within DvMF_3004at 3792.050 kb on - strandat 3792.133 kb on + strandat 3792.139 kb on + strandat 3792.490 kb on + strand, within DvMF_3005at 3792.563 kb on - strand, within DvMF_3005at 3792.740 kb on + strand, within DvMF_3005at 3792.748 kb on - strand, within DvMF_3005at 3792.782 kb on - strand, within DvMF_3005at 3793.271 kb on - strand, within DvMF_3005at 3793.317 kb on - strand, within DvMF_3005at 3793.347 kb on + strand, within DvMF_3005at 3793.354 kb on + strand, within DvMF_3005at 3794.042 kb on - strand, within DvMF_3006at 3794.198 kb on + strand, within DvMF_3006

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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3,791,232 + -0.8
3,791,240 - -0.9
3,791,375 - -0.9
3,791,385 + +0.2
3,791,489 - DvMF_3004 0.22 -1.2
3,791,587 + DvMF_3004 0.43 -1.4
3,791,595 - DvMF_3004 0.45 -1.9
3,791,614 - DvMF_3004 0.49 -1.1
3,791,642 + DvMF_3004 0.55 -0.5
3,792,050 - -1.1
3,792,133 + +0.6
3,792,139 + -1.5
3,792,490 + DvMF_3005 0.30 +0.2
3,792,563 - DvMF_3005 0.35 -1.1
3,792,740 + DvMF_3005 0.47 -0.6
3,792,748 - DvMF_3005 0.48 -0.6
3,792,782 - DvMF_3005 0.50 -0.4
3,793,271 - DvMF_3005 0.84 -2.6
3,793,317 - DvMF_3005 0.87 -0.2
3,793,347 + DvMF_3005 0.89 +0.3
3,793,354 + DvMF_3005 0.89 -0.4
3,794,042 - DvMF_3006 0.53 -2.5
3,794,198 + DvMF_3006 0.72 -0.8

Or see this region's nucleotide sequence