Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2863

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2861 and DvMF_2862 are separated by 182 nucleotidesDvMF_2862 and DvMF_2863 are separated by 235 nucleotidesDvMF_2863 and DvMF_2864 are separated by 310 nucleotides DvMF_2861: DvMF_2861 - import inner membrane translocase subunit Tim44 (RefSeq), at 3,612,557 to 3,613,483 _2861 DvMF_2862: DvMF_2862 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 3,613,666 to 3,614,157 _2862 DvMF_2863: DvMF_2863 - AsmA family protein (RefSeq), at 3,614,393 to 3,616,528 _2863 DvMF_2864: DvMF_2864 - cobyric acid synthase (RefSeq), at 3,616,839 to 3,618,494 _2864 Position (kb) 3614 3615 3616 3617Strain fitness (log2 ratio) -2 -1 0 1at 3613.759 kb on - strand, within DvMF_2862at 3614.016 kb on - strand, within DvMF_2862at 3614.138 kb on + strandat 3614.218 kb on + strandat 3614.493 kb on + strandat 3614.494 kb on + strandat 3614.494 kb on + strandat 3614.725 kb on + strand, within DvMF_2863at 3614.836 kb on + strand, within DvMF_2863at 3615.205 kb on + strand, within DvMF_2863at 3615.218 kb on - strand, within DvMF_2863at 3615.528 kb on + strand, within DvMF_2863at 3616.141 kb on + strand, within DvMF_2863at 3616.342 kb on + strandat 3616.435 kb on + strandat 3616.518 kb on - strandat 3616.581 kb on + strandat 3616.767 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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3,613,759 - DvMF_2862 0.19 -1.3
3,614,016 - DvMF_2862 0.71 -1.0
3,614,138 + -1.4
3,614,218 + -1.0
3,614,493 + -0.6
3,614,494 + -0.6
3,614,494 + -0.9
3,614,725 + DvMF_2863 0.16 -1.1
3,614,836 + DvMF_2863 0.21 +0.9
3,615,205 + DvMF_2863 0.38 -2.1
3,615,218 - DvMF_2863 0.39 +0.8
3,615,528 + DvMF_2863 0.53 -0.1
3,616,141 + DvMF_2863 0.82 -0.7
3,616,342 + +0.9
3,616,435 + -0.5
3,616,518 - -0.5
3,616,581 + -1.4
3,616,767 + -0.3

Or see this region's nucleotide sequence