Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2669

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2668 and rnhA are separated by 90 nucleotidesrnhA and DvMF_2670 are separated by 119 nucleotidesDvMF_2670 and DvMF_2671 are separated by 12 nucleotides DvMF_2668: DvMF_2668 - type IV pilus assembly PilZ (RefSeq), at 3,371,117 to 3,371,827 _2668 DvMF_2669: rnhA - ribonuclease H (RefSeq), at 3,371,918 to 3,372,388 rnhA DvMF_2670: DvMF_2670 - hypothetical protein (RefSeq), at 3,372,508 to 3,373,029 _2670 DvMF_2671: DvMF_2671 - Aldehyde ferredoxin oxidoreductase (RefSeq), at 3,373,042 to 3,374,847 _2671 Position (kb) 3371 3372 3373Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3370.934 kb on - strandat 3371.022 kb on - strandat 3371.148 kb on + strandat 3371.172 kb on + strandat 3371.311 kb on + strand, within DvMF_2668at 3371.967 kb on - strand, within rnhAat 3372.188 kb on - strand, within rnhAat 3372.188 kb on - strand, within rnhAat 3372.195 kb on - strand, within rnhAat 3372.212 kb on - strand, within rnhAat 3372.265 kb on + strand, within rnhAat 3372.265 kb on + strand, within rnhAat 3372.533 kb on - strandat 3372.545 kb on - strandat 3372.628 kb on + strand, within DvMF_2670at 3372.710 kb on - strand, within DvMF_2670at 3372.725 kb on - strand, within DvMF_2670at 3372.759 kb on + strand, within DvMF_2670at 3372.767 kb on - strand, within DvMF_2670at 3372.767 kb on - strand, within DvMF_2670at 3372.767 kb on - strand, within DvMF_2670at 3372.767 kb on - strand, within DvMF_2670at 3372.767 kb on - strand, within DvMF_2670at 3372.785 kb on + strand, within DvMF_2670at 3372.787 kb on + strand, within DvMF_2670at 3372.793 kb on - strand, within DvMF_2670at 3372.806 kb on + strand, within DvMF_2670at 3372.812 kb on - strand, within DvMF_2670at 3372.821 kb on + strand, within DvMF_2670at 3373.207 kb on - strandat 3373.256 kb on + strand, within DvMF_2671at 3373.265 kb on - strand, within DvMF_2671at 3373.344 kb on + strand, within DvMF_2671at 3373.363 kb on + strand, within DvMF_2671

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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3,370,934 - -1.0
3,371,022 - -3.1
3,371,148 + +1.4
3,371,172 + +3.2
3,371,311 + DvMF_2668 0.27 -2.5
3,371,967 - rnhA DvMF_2669 0.10 -2.7
3,372,188 - rnhA DvMF_2669 0.57 -1.8
3,372,188 - rnhA DvMF_2669 0.57 -2.4
3,372,195 - rnhA DvMF_2669 0.59 -1.4
3,372,212 - rnhA DvMF_2669 0.62 -4.2
3,372,265 + rnhA DvMF_2669 0.74 -1.4
3,372,265 + rnhA DvMF_2669 0.74 -0.2
3,372,533 - +0.0
3,372,545 - -0.8
3,372,628 + DvMF_2670 0.23 +1.4
3,372,710 - DvMF_2670 0.39 +0.2
3,372,725 - DvMF_2670 0.42 -0.8
3,372,759 + DvMF_2670 0.48 -2.5
3,372,767 - DvMF_2670 0.50 -0.1
3,372,767 - DvMF_2670 0.50 -0.9
3,372,767 - DvMF_2670 0.50 -3.8
3,372,767 - DvMF_2670 0.50 -0.1
3,372,767 - DvMF_2670 0.50 -0.4
3,372,785 + DvMF_2670 0.53 +0.1
3,372,787 + DvMF_2670 0.53 -1.7
3,372,793 - DvMF_2670 0.55 -0.3
3,372,806 + DvMF_2670 0.57 +0.4
3,372,812 - DvMF_2670 0.58 -0.8
3,372,821 + DvMF_2670 0.60 +0.2
3,373,207 - -0.9
3,373,256 + DvMF_2671 0.12 -0.5
3,373,265 - DvMF_2671 0.12 -0.3
3,373,344 + DvMF_2671 0.17 -2.7
3,373,363 + DvMF_2671 0.18 -2.3

Or see this region's nucleotide sequence