Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2537

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2536 and DvMF_2537 are separated by 10 nucleotidesDvMF_2537 and DvMF_2538 are separated by 342 nucleotidesDvMF_2538 and DvMF_2539 are separated by 296 nucleotides DvMF_2536: DvMF_2536 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,201,285 to 3,202,718 _2536 DvMF_2537: DvMF_2537 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 3,202,729 to 3,206,397 _2537 DvMF_2538: DvMF_2538 - hypothetical protein (RefSeq), at 3,206,740 to 3,207,027 _2538 DvMF_2539: DvMF_2539 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,207,324 to 3,209,369 _2539 Position (kb) 3202 3203 3204 3205 3206 3207Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3202.132 kb on - strand, within DvMF_2536at 3202.134 kb on + strand, within DvMF_2536at 3202.142 kb on - strand, within DvMF_2536at 3202.142 kb on - strand, within DvMF_2536at 3202.299 kb on + strand, within DvMF_2536at 3202.312 kb on + strand, within DvMF_2536at 3202.329 kb on + strand, within DvMF_2536at 3202.540 kb on - strand, within DvMF_2536at 3202.805 kb on - strandat 3202.910 kb on - strandat 3202.993 kb on + strandat 3203.046 kb on + strandat 3203.269 kb on - strand, within DvMF_2537at 3203.285 kb on - strand, within DvMF_2537at 3203.363 kb on - strand, within DvMF_2537at 3203.400 kb on + strand, within DvMF_2537at 3203.617 kb on - strand, within DvMF_2537at 3203.652 kb on - strand, within DvMF_2537at 3204.072 kb on + strand, within DvMF_2537at 3204.080 kb on - strand, within DvMF_2537at 3204.086 kb on + strand, within DvMF_2537at 3204.103 kb on + strand, within DvMF_2537at 3204.214 kb on - strand, within DvMF_2537at 3204.567 kb on - strand, within DvMF_2537at 3204.741 kb on + strand, within DvMF_2537at 3204.759 kb on + strandat 3204.759 kb on + strand, within DvMF_2537at 3204.759 kb on + strand, within DvMF_2537at 3204.767 kb on - strand, within DvMF_2537at 3204.856 kb on + strand, within DvMF_2537at 3204.856 kb on + strand, within DvMF_2537at 3204.864 kb on - strand, within DvMF_2537at 3204.988 kb on + strand, within DvMF_2537at 3205.041 kb on - strand, within DvMF_2537at 3205.316 kb on - strand, within DvMF_2537at 3205.435 kb on + strand, within DvMF_2537at 3205.504 kb on + strand, within DvMF_2537at 3206.254 kb on - strandat 3206.361 kb on + strandat 3206.834 kb on + strand, within DvMF_2538at 3206.837 kb on - strand, within DvMF_2538at 3206.881 kb on - strand, within DvMF_2538at 3206.918 kb on + strand, within DvMF_2538at 3207.062 kb on - strandat 3207.082 kb on + strandat 3207.178 kb on - strandat 3207.192 kb on + strandat 3207.200 kb on - strandat 3207.363 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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3,202,132 - DvMF_2536 0.59 -0.9
3,202,134 + DvMF_2536 0.59 -0.1
3,202,142 - DvMF_2536 0.60 -0.1
3,202,142 - DvMF_2536 0.60 -0.1
3,202,299 + DvMF_2536 0.71 +0.6
3,202,312 + DvMF_2536 0.72 -1.0
3,202,329 + DvMF_2536 0.73 -0.4
3,202,540 - DvMF_2536 0.88 -0.4
3,202,805 - -1.7
3,202,910 - -0.5
3,202,993 + -0.9
3,203,046 + -1.1
3,203,269 - DvMF_2537 0.15 -1.2
3,203,285 - DvMF_2537 0.15 +0.2
3,203,363 - DvMF_2537 0.17 -0.3
3,203,400 + DvMF_2537 0.18 -0.5
3,203,617 - DvMF_2537 0.24 -2.1
3,203,652 - DvMF_2537 0.25 -0.4
3,204,072 + DvMF_2537 0.37 -0.9
3,204,080 - DvMF_2537 0.37 -0.4
3,204,086 + DvMF_2537 0.37 -0.2
3,204,103 + DvMF_2537 0.37 -1.3
3,204,214 - DvMF_2537 0.40 -0.1
3,204,567 - DvMF_2537 0.50 -0.9
3,204,741 + DvMF_2537 0.55 -0.6
3,204,759 + +2.1
3,204,759 + DvMF_2537 0.55 -0.8
3,204,759 + DvMF_2537 0.55 -1.1
3,204,767 - DvMF_2537 0.56 -0.5
3,204,856 + DvMF_2537 0.58 -0.9
3,204,856 + DvMF_2537 0.58 -0.7
3,204,864 - DvMF_2537 0.58 -1.3
3,204,988 + DvMF_2537 0.62 -3.3
3,205,041 - DvMF_2537 0.63 +2.6
3,205,316 - DvMF_2537 0.71 -0.5
3,205,435 + DvMF_2537 0.74 -2.5
3,205,504 + DvMF_2537 0.76 +3.4
3,206,254 - -0.7
3,206,361 + -3.3
3,206,834 + DvMF_2538 0.33 -0.3
3,206,837 - DvMF_2538 0.34 -0.9
3,206,881 - DvMF_2538 0.49 -0.6
3,206,918 + DvMF_2538 0.62 -1.9
3,207,062 - +0.2
3,207,082 + -1.2
3,207,178 - -2.1
3,207,192 + -1.0
3,207,200 - -4.1
3,207,363 - -2.0

Or see this region's nucleotide sequence