Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2397

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2396 and DvMF_2397 are separated by 151 nucleotidesDvMF_2397 and DvMF_2398 are separated by 438 nucleotides DvMF_2396: DvMF_2396 - carbonic anhydrase (RefSeq), at 3,028,863 to 3,029,594 _2396 DvMF_2397: DvMF_2397 - hypothetical protein (RefSeq), at 3,029,746 to 3,030,570 _2397 DvMF_2398: DvMF_2398 - ABC transporter related (RefSeq), at 3,031,009 to 3,031,941 _2398 Position (kb) 3029 3030 3031Strain fitness (log2 ratio) -2 -1 0 1at 3029.096 kb on - strand, within DvMF_2396at 3029.156 kb on - strand, within DvMF_2396at 3029.354 kb on - strand, within DvMF_2396at 3029.401 kb on - strand, within DvMF_2396at 3029.519 kb on + strand, within DvMF_2396at 3030.459 kb on + strand, within DvMF_2397at 3030.589 kb on - strandat 3030.644 kb on - strandat 3030.656 kb on - strandat 3030.738 kb on - strandat 3030.890 kb on + strandat 3031.122 kb on - strand, within DvMF_2398at 3031.324 kb on + strand, within DvMF_2398at 3031.337 kb on - strand, within DvMF_2398

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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3,029,096 - DvMF_2396 0.32 -0.5
3,029,156 - DvMF_2396 0.40 -1.5
3,029,354 - DvMF_2396 0.67 -0.7
3,029,401 - DvMF_2396 0.73 -0.7
3,029,519 + DvMF_2396 0.90 -0.7
3,030,459 + DvMF_2397 0.86 -1.4
3,030,589 - -0.8
3,030,644 - -0.9
3,030,656 - -1.1
3,030,738 - +0.0
3,030,890 + +0.5
3,031,122 - DvMF_2398 0.12 -1.0
3,031,324 + DvMF_2398 0.34 -0.9
3,031,337 - DvMF_2398 0.35 -2.0

Or see this region's nucleotide sequence