Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2382

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2381 and DvMF_2382 are separated by 542 nucleotidesDvMF_2382 and DvMF_2383 are separated by 153 nucleotides DvMF_2381: DvMF_2381 - protein of unknown function DUF606 (RefSeq), at 3,008,545 to 3,008,985 _2381 DvMF_2382: DvMF_2382 - aspartate-semialdehyde dehydrogenase (RefSeq), at 3,009,528 to 3,010,577 _2382 DvMF_2383: DvMF_2383 - aminotransferase class IV (RefSeq), at 3,010,731 to 3,011,672 _2383 Position (kb) 3009 3010 3011Strain fitness (log2 ratio) -3 -2 -1 0 1at 3008.561 kb on + strandat 3008.585 kb on + strandat 3008.593 kb on - strand, within DvMF_2381at 3008.633 kb on + strand, within DvMF_2381at 3008.831 kb on - strand, within DvMF_2381at 3008.903 kb on + strand, within DvMF_2381at 3009.020 kb on - strandat 3009.080 kb on - strandat 3009.245 kb on + strandat 3009.458 kb on - strandat 3010.558 kb on - strandat 3010.750 kb on - strandat 3010.773 kb on - strandat 3010.887 kb on - strand, within DvMF_2383at 3011.215 kb on + strand, within DvMF_2383at 3011.417 kb on - strand, within DvMF_2383at 3011.553 kb on - strand, within DvMF_2383

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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3,008,561 + -1.0
3,008,585 + -2.5
3,008,593 - DvMF_2381 0.11 +0.4
3,008,633 + DvMF_2381 0.20 -3.2
3,008,831 - DvMF_2381 0.65 +0.6
3,008,903 + DvMF_2381 0.81 -0.2
3,009,020 - +0.3
3,009,080 - -0.8
3,009,245 + -0.6
3,009,458 - -1.5
3,010,558 - -2.5
3,010,750 - -1.3
3,010,773 - -1.4
3,010,887 - DvMF_2383 0.17 -0.2
3,011,215 + DvMF_2383 0.51 -1.2
3,011,417 - DvMF_2383 0.73 -1.2
3,011,553 - DvMF_2383 0.87 -1.3

Or see this region's nucleotide sequence