Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1787

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1786 and DvMF_1787 are separated by 224 nucleotidesDvMF_1787 and DvMF_1788 are separated by 441 nucleotides DvMF_1786: DvMF_1786 - protein of unknown function DUF523 (RefSeq), at 2,185,751 to 2,186,758 _1786 DvMF_1787: DvMF_1787 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 2,186,983 to 2,187,639 _1787 DvMF_1788: DvMF_1788 - SNARE associated Golgi protein (RefSeq), at 2,188,081 to 2,189,025 _1788 Position (kb) 2186 2187 2188Strain fitness (log2 ratio) -2 -1 0 1at 2186.052 kb on - strand, within DvMF_1786at 2186.388 kb on + strand, within DvMF_1786at 2186.485 kb on + strand, within DvMF_1786at 2186.485 kb on + strand, within DvMF_1786at 2186.485 kb on + strand, within DvMF_1786at 2186.618 kb on - strand, within DvMF_1786at 2186.646 kb on - strand, within DvMF_1786at 2186.715 kb on - strandat 2186.733 kb on - strandat 2186.937 kb on - strandat 2187.426 kb on + strand, within DvMF_1787at 2187.434 kb on - strand, within DvMF_1787at 2187.478 kb on + strand, within DvMF_1787at 2187.527 kb on - strand, within DvMF_1787at 2187.801 kb on + strandat 2187.808 kb on + strandat 2187.840 kb on - strandat 2187.883 kb on + strandat 2187.950 kb on - strandat 2187.979 kb on - strandat 2187.981 kb on + strandat 2188.011 kb on - strandat 2188.229 kb on + strand, within DvMF_1788at 2188.247 kb on + strand, within DvMF_1788at 2188.370 kb on - strand, within DvMF_1788at 2188.542 kb on - strand, within DvMF_1788

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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2,186,052 - DvMF_1786 0.30 -0.4
2,186,388 + DvMF_1786 0.63 +0.0
2,186,485 + DvMF_1786 0.73 -0.0
2,186,485 + DvMF_1786 0.73 -0.1
2,186,485 + DvMF_1786 0.73 -1.5
2,186,618 - DvMF_1786 0.86 -1.0
2,186,646 - DvMF_1786 0.89 -0.7
2,186,715 - +0.1
2,186,733 - +0.4
2,186,937 - -1.4
2,187,426 + DvMF_1787 0.67 -2.7
2,187,434 - DvMF_1787 0.69 +0.8
2,187,478 + DvMF_1787 0.75 -0.2
2,187,527 - DvMF_1787 0.83 -1.5
2,187,801 + -1.0
2,187,808 + -0.4
2,187,840 - -2.4
2,187,883 + -1.0
2,187,950 - -0.9
2,187,979 - -0.7
2,187,981 + -0.2
2,188,011 - -1.4
2,188,229 + DvMF_1788 0.16 -1.1
2,188,247 + DvMF_1788 0.18 -0.9
2,188,370 - DvMF_1788 0.31 +0.6
2,188,542 - DvMF_1788 0.49 -0.6

Or see this region's nucleotide sequence