Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1742

Experiment: MoLS4 with Chlorate 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1741 and DvMF_1742 are separated by 39 nucleotidesDvMF_1742 and DvMF_1743 overlap by 4 nucleotidesDvMF_1743 and DvMF_1744 overlap by 8 nucleotides DvMF_1741: DvMF_1741 - tryptophan synthase subunit beta (RefSeq), at 2,128,334 to 2,129,518 _1741 DvMF_1742: DvMF_1742 - Phosphoribosylanthranilate isomerase (RefSeq), at 2,129,558 to 2,130,235 _1742 DvMF_1743: DvMF_1743 - Indole-3-glycerol-phosphate synthase (RefSeq), at 2,130,232 to 2,131,197 _1743 DvMF_1744: DvMF_1744 - anthranilate phosphoribosyltransferase (RefSeq), at 2,131,190 to 2,132,206 _1744 Position (kb) 2129 2130 2131Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2128.583 kb on - strand, within DvMF_1741at 2128.616 kb on - strand, within DvMF_1741at 2128.646 kb on + strand, within DvMF_1741at 2128.703 kb on - strand, within DvMF_1741at 2128.726 kb on + strand, within DvMF_1741at 2128.951 kb on - strand, within DvMF_1741at 2128.973 kb on - strand, within DvMF_1741at 2129.072 kb on + strand, within DvMF_1741at 2129.092 kb on + strand, within DvMF_1741at 2129.248 kb on + strand, within DvMF_1741at 2129.251 kb on - strand, within DvMF_1741at 2129.335 kb on + strand, within DvMF_1741at 2129.368 kb on + strand, within DvMF_1741at 2129.528 kb on - strandat 2129.646 kb on + strand, within DvMF_1742at 2129.666 kb on + strand, within DvMF_1742at 2129.865 kb on + strand, within DvMF_1742at 2130.138 kb on + strand, within DvMF_1742at 2130.178 kb on + strandat 2130.405 kb on - strand, within DvMF_1743at 2130.452 kb on - strand, within DvMF_1743at 2130.675 kb on + strand, within DvMF_1743at 2130.840 kb on + strand, within DvMF_1743at 2130.892 kb on + strand, within DvMF_1743at 2130.909 kb on + strand, within DvMF_1743at 2131.049 kb on + strand, within DvMF_1743

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 6.25 mM
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2,128,583 - DvMF_1741 0.21 -4.5
2,128,616 - DvMF_1741 0.24 -2.7
2,128,646 + DvMF_1741 0.26 -2.4
2,128,703 - DvMF_1741 0.31 -2.9
2,128,726 + DvMF_1741 0.33 -3.9
2,128,951 - DvMF_1741 0.52 -3.9
2,128,973 - DvMF_1741 0.54 -2.7
2,129,072 + DvMF_1741 0.62 -3.2
2,129,092 + DvMF_1741 0.64 -3.7
2,129,248 + DvMF_1741 0.77 -2.5
2,129,251 - DvMF_1741 0.77 -2.0
2,129,335 + DvMF_1741 0.84 -4.3
2,129,368 + DvMF_1741 0.87 +2.7
2,129,528 - +0.6
2,129,646 + DvMF_1742 0.13 -4.0
2,129,666 + DvMF_1742 0.16 -4.3
2,129,865 + DvMF_1742 0.45 -5.0
2,130,138 + DvMF_1742 0.86 -1.3
2,130,178 + -3.0
2,130,405 - DvMF_1743 0.18 -2.3
2,130,452 - DvMF_1743 0.23 -2.0
2,130,675 + DvMF_1743 0.46 -2.6
2,130,840 + DvMF_1743 0.63 -1.8
2,130,892 + DvMF_1743 0.68 -2.8
2,130,909 + DvMF_1743 0.70 -1.7
2,131,049 + DvMF_1743 0.85 -4.8

Or see this region's nucleotide sequence